Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1158

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1157 and Ac3H11_1158 are separated by 88 nucleotidesAc3H11_1158 and Ac3H11_1159 are separated by 133 nucleotides Ac3H11_1157 - Kynureninase (EC 3.7.1.3), at 109,362 to 110,672 _1157 Ac3H11_1158 - Kynurenine formamidase, bacterial (EC 3.5.1.9), at 110,761 to 111,414 _1158 Ac3H11_1159 - Sensory histidine kinase QseC, at 111,548 to 112,969 _1159 Position (kb) 110 111 112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 109.846 kb on + strand, within Ac3H11_1157at 109.873 kb on + strand, within Ac3H11_1157at 109.873 kb on + strand, within Ac3H11_1157at 109.873 kb on + strand, within Ac3H11_1157at 109.996 kb on + strand, within Ac3H11_1157at 109.997 kb on - strand, within Ac3H11_1157at 109.997 kb on - strand, within Ac3H11_1157at 110.152 kb on + strand, within Ac3H11_1157at 110.152 kb on + strand, within Ac3H11_1157at 110.152 kb on + strand, within Ac3H11_1157at 110.269 kb on + strand, within Ac3H11_1157at 110.269 kb on + strand, within Ac3H11_1157at 110.270 kb on - strand, within Ac3H11_1157at 110.270 kb on - strand, within Ac3H11_1157at 110.270 kb on - strand, within Ac3H11_1157at 110.270 kb on - strand, within Ac3H11_1157at 110.270 kb on - strand, within Ac3H11_1157at 110.365 kb on + strand, within Ac3H11_1157at 110.365 kb on + strand, within Ac3H11_1157at 110.365 kb on + strand, within Ac3H11_1157at 110.366 kb on - strand, within Ac3H11_1157at 110.366 kb on - strand, within Ac3H11_1157at 110.366 kb on - strand, within Ac3H11_1157at 110.578 kb on + strandat 110.578 kb on + strandat 110.579 kb on - strandat 110.710 kb on + strandat 110.762 kb on + strandat 110.762 kb on + strandat 110.762 kb on + strandat 110.762 kb on + strandat 110.763 kb on - strandat 110.763 kb on - strandat 110.763 kb on - strandat 111.012 kb on - strand, within Ac3H11_1158at 111.056 kb on + strand, within Ac3H11_1158at 111.056 kb on + strand, within Ac3H11_1158at 111.056 kb on + strand, within Ac3H11_1158at 111.057 kb on - strand, within Ac3H11_1158at 111.057 kb on - strand, within Ac3H11_1158at 111.057 kb on - strand, within Ac3H11_1158at 111.057 kb on - strand, within Ac3H11_1158at 111.057 kb on - strand, within Ac3H11_1158at 111.215 kb on + strand, within Ac3H11_1158at 111.215 kb on + strand, within Ac3H11_1158at 111.216 kb on - strand, within Ac3H11_1158at 111.216 kb on - strand, within Ac3H11_1158at 111.216 kb on - strand, within Ac3H11_1158at 111.320 kb on + strand, within Ac3H11_1158at 111.320 kb on + strand, within Ac3H11_1158at 111.491 kb on + strandat 112.400 kb on + strand, within Ac3H11_1159at 112.400 kb on + strand, within Ac3H11_1159at 112.400 kb on + strand, within Ac3H11_1159at 112.400 kb on + strand, within Ac3H11_1159at 112.400 kb on + strand, within Ac3H11_1159at 112.401 kb on - strand, within Ac3H11_1159at 112.401 kb on - strand, within Ac3H11_1159

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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109,846 + Ac3H11_1157 0.37 +0.7
109,873 + Ac3H11_1157 0.39 -1.0
109,873 + Ac3H11_1157 0.39 -0.2
109,873 + Ac3H11_1157 0.39 -0.5
109,996 + Ac3H11_1157 0.48 +0.3
109,997 - Ac3H11_1157 0.48 +0.9
109,997 - Ac3H11_1157 0.48 +0.3
110,152 + Ac3H11_1157 0.60 +0.6
110,152 + Ac3H11_1157 0.60 +1.3
110,152 + Ac3H11_1157 0.60 +0.8
110,269 + Ac3H11_1157 0.69 +0.0
110,269 + Ac3H11_1157 0.69 +0.4
110,270 - Ac3H11_1157 0.69 -1.2
110,270 - Ac3H11_1157 0.69 +2.3
110,270 - Ac3H11_1157 0.69 -0.4
110,270 - Ac3H11_1157 0.69 -0.1
110,270 - Ac3H11_1157 0.69 -0.1
110,365 + Ac3H11_1157 0.77 -1.1
110,365 + Ac3H11_1157 0.77 +0.9
110,365 + Ac3H11_1157 0.77 -0.7
110,366 - Ac3H11_1157 0.77 +0.9
110,366 - Ac3H11_1157 0.77 -0.5
110,366 - Ac3H11_1157 0.77 +0.2
110,578 + +0.2
110,578 + -0.1
110,579 - +0.0
110,710 + +1.3
110,762 + -1.1
110,762 + -0.3
110,762 + -0.6
110,762 + -0.0
110,763 - +0.4
110,763 - +0.9
110,763 - -1.7
111,012 - Ac3H11_1158 0.38 +0.3
111,056 + Ac3H11_1158 0.45 +1.1
111,056 + Ac3H11_1158 0.45 +2.7
111,056 + Ac3H11_1158 0.45 +0.7
111,057 - Ac3H11_1158 0.45 +0.0
111,057 - Ac3H11_1158 0.45 -0.0
111,057 - Ac3H11_1158 0.45 +0.5
111,057 - Ac3H11_1158 0.45 +1.4
111,057 - Ac3H11_1158 0.45 +0.4
111,215 + Ac3H11_1158 0.69 +0.2
111,215 + Ac3H11_1158 0.69 +0.3
111,216 - Ac3H11_1158 0.70 -3.2
111,216 - Ac3H11_1158 0.70 +0.7
111,216 - Ac3H11_1158 0.70 -0.0
111,320 + Ac3H11_1158 0.85 +0.6
111,320 + Ac3H11_1158 0.85 +0.7
111,491 + -0.4
112,400 + Ac3H11_1159 0.60 -0.5
112,400 + Ac3H11_1159 0.60 +0.6
112,400 + Ac3H11_1159 0.60 +0.4
112,400 + Ac3H11_1159 0.60 +1.1
112,400 + Ac3H11_1159 0.60 +0.1
112,401 - Ac3H11_1159 0.60 -2.0
112,401 - Ac3H11_1159 0.60 -1.0

Or see this region's nucleotide sequence