Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25120

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25110 and AZOBR_RS25115 overlap by 8 nucleotidesAZOBR_RS25115 and AZOBR_RS25120 are separated by 19 nucleotidesAZOBR_RS25120 and AZOBR_RS25125 are separated by 346 nucleotides AZOBR_RS25110: AZOBR_RS25110 - (Fe-S)-binding protein, at 689,081 to 690,505 _RS25110 AZOBR_RS25115: AZOBR_RS25115 - Fe-S oxidoreductase, at 690,498 to 691,268 _RS25115 AZOBR_RS25120: AZOBR_RS25120 - 4Fe-4S ferredoxin, at 691,288 to 694,176 _RS25120 AZOBR_RS25125: AZOBR_RS25125 - L-lactate permease, at 694,523 to 696,211 _RS25125 Position (kb) 691 692 693 694 695Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 690.863 kb on + strand, within AZOBR_RS25115at 690.864 kb on - strand, within AZOBR_RS25115at 691.030 kb on + strand, within AZOBR_RS25115at 691.030 kb on + strand, within AZOBR_RS25115at 691.030 kb on + strand, within AZOBR_RS25115at 691.031 kb on - strand, within AZOBR_RS25115at 691.031 kb on - strand, within AZOBR_RS25115at 691.031 kb on - strand, within AZOBR_RS25115at 691.031 kb on - strand, within AZOBR_RS25115at 691.031 kb on - strand, within AZOBR_RS25115at 691.084 kb on + strand, within AZOBR_RS25115at 691.085 kb on - strand, within AZOBR_RS25115at 691.085 kb on - strand, within AZOBR_RS25115at 691.213 kb on + strandat 691.361 kb on + strandat 691.361 kb on + strandat 691.430 kb on + strandat 691.878 kb on + strand, within AZOBR_RS25120at 692.024 kb on + strand, within AZOBR_RS25120at 692.024 kb on + strand, within AZOBR_RS25120at 692.024 kb on + strand, within AZOBR_RS25120at 692.024 kb on + strand, within AZOBR_RS25120at 692.024 kb on + strand, within AZOBR_RS25120at 692.025 kb on - strand, within AZOBR_RS25120at 692.025 kb on - strand, within AZOBR_RS25120at 692.025 kb on - strand, within AZOBR_RS25120at 692.025 kb on - strand, within AZOBR_RS25120at 692.025 kb on - strand, within AZOBR_RS25120at 692.025 kb on - strand, within AZOBR_RS25120at 692.267 kb on + strand, within AZOBR_RS25120at 692.267 kb on + strand, within AZOBR_RS25120at 692.267 kb on + strand, within AZOBR_RS25120at 692.267 kb on + strand, within AZOBR_RS25120at 692.267 kb on + strand, within AZOBR_RS25120at 692.267 kb on + strand, within AZOBR_RS25120at 692.267 kb on + strand, within AZOBR_RS25120at 692.268 kb on - strand, within AZOBR_RS25120at 692.268 kb on - strand, within AZOBR_RS25120at 692.268 kb on - strand, within AZOBR_RS25120at 692.268 kb on - strand, within AZOBR_RS25120at 692.268 kb on - strandat 692.268 kb on - strand, within AZOBR_RS25120at 692.268 kb on - strand, within AZOBR_RS25120at 692.268 kb on - strand, within AZOBR_RS25120at 692.268 kb on - strand, within AZOBR_RS25120at 692.268 kb on - strand, within AZOBR_RS25120at 692.399 kb on + strand, within AZOBR_RS25120at 692.405 kb on + strand, within AZOBR_RS25120at 692.405 kb on + strand, within AZOBR_RS25120at 692.405 kb on + strand, within AZOBR_RS25120at 692.406 kb on - strand, within AZOBR_RS25120at 692.690 kb on + strand, within AZOBR_RS25120at 692.691 kb on - strand, within AZOBR_RS25120at 692.691 kb on - strand, within AZOBR_RS25120at 692.771 kb on + strand, within AZOBR_RS25120at 692.771 kb on + strand, within AZOBR_RS25120at 692.771 kb on + strand, within AZOBR_RS25120at 692.771 kb on + strand, within AZOBR_RS25120at 692.771 kb on + strand, within AZOBR_RS25120at 692.772 kb on - strand, within AZOBR_RS25120at 692.772 kb on - strand, within AZOBR_RS25120at 692.909 kb on + strand, within AZOBR_RS25120at 693.056 kb on + strand, within AZOBR_RS25120at 693.056 kb on + strand, within AZOBR_RS25120at 693.057 kb on - strand, within AZOBR_RS25120at 693.345 kb on - strand, within AZOBR_RS25120at 693.392 kb on + strand, within AZOBR_RS25120at 693.392 kb on + strand, within AZOBR_RS25120at 693.392 kb on + strand, within AZOBR_RS25120at 693.393 kb on - strand, within AZOBR_RS25120at 693.393 kb on - strand, within AZOBR_RS25120at 693.495 kb on - strand, within AZOBR_RS25120at 694.061 kb on + strandat 694.083 kb on - strandat 694.083 kb on - strandat 694.160 kb on + strandat 694.457 kb on + strandat 694.548 kb on + strandat 694.548 kb on + strandat 694.548 kb on + strandat 694.548 kb on + strandat 694.549 kb on - strandat 694.549 kb on - strandat 694.549 kb on - strandat 694.549 kb on - strandat 694.549 kb on - strandat 694.908 kb on + strandat 694.951 kb on - strand, within AZOBR_RS25125at 695.088 kb on + strand, within AZOBR_RS25125at 695.169 kb on + strand, within AZOBR_RS25125at 695.169 kb on + strand, within AZOBR_RS25125at 695.170 kb on - strand, within AZOBR_RS25125at 695.170 kb on - strand, within AZOBR_RS25125at 695.170 kb on - strand, within AZOBR_RS25125at 695.170 kb on - strand, within AZOBR_RS25125

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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690,863 + AZOBR_RS25115 0.47 +0.5
690,864 - AZOBR_RS25115 0.47 +0.4
691,030 + AZOBR_RS25115 0.69 +0.1
691,030 + AZOBR_RS25115 0.69 -1.2
691,030 + AZOBR_RS25115 0.69 -0.1
691,031 - AZOBR_RS25115 0.69 -0.2
691,031 - AZOBR_RS25115 0.69 +0.5
691,031 - AZOBR_RS25115 0.69 -1.3
691,031 - AZOBR_RS25115 0.69 +0.8
691,031 - AZOBR_RS25115 0.69 -0.7
691,084 + AZOBR_RS25115 0.76 -0.1
691,085 - AZOBR_RS25115 0.76 -0.9
691,085 - AZOBR_RS25115 0.76 -1.4
691,213 + -0.5
691,361 + -2.7
691,361 + -2.5
691,430 + -2.7
691,878 + AZOBR_RS25120 0.20 -2.5
692,024 + AZOBR_RS25120 0.25 -1.3
692,024 + AZOBR_RS25120 0.25 -1.7
692,024 + AZOBR_RS25120 0.25 -2.7
692,024 + AZOBR_RS25120 0.25 -3.4
692,024 + AZOBR_RS25120 0.25 -1.4
692,025 - AZOBR_RS25120 0.26 -1.8
692,025 - AZOBR_RS25120 0.26 -2.3
692,025 - AZOBR_RS25120 0.26 -3.0
692,025 - AZOBR_RS25120 0.26 -1.8
692,025 - AZOBR_RS25120 0.26 -2.0
692,025 - AZOBR_RS25120 0.26 -1.7
692,267 + AZOBR_RS25120 0.34 -2.7
692,267 + AZOBR_RS25120 0.34 -4.2
692,267 + AZOBR_RS25120 0.34 -3.7
692,267 + AZOBR_RS25120 0.34 -0.4
692,267 + AZOBR_RS25120 0.34 -2.3
692,267 + AZOBR_RS25120 0.34 -3.8
692,267 + AZOBR_RS25120 0.34 -3.3
692,268 - AZOBR_RS25120 0.34 -5.0
692,268 - AZOBR_RS25120 0.34 -3.2
692,268 - AZOBR_RS25120 0.34 -3.9
692,268 - AZOBR_RS25120 0.34 -2.2
692,268 - -0.1
692,268 - AZOBR_RS25120 0.34 -3.3
692,268 - AZOBR_RS25120 0.34 -1.9
692,268 - AZOBR_RS25120 0.34 -2.0
692,268 - AZOBR_RS25120 0.34 -3.7
692,268 - AZOBR_RS25120 0.34 -2.8
692,399 + AZOBR_RS25120 0.38 -2.2
692,405 + AZOBR_RS25120 0.39 -3.7
692,405 + AZOBR_RS25120 0.39 -2.6
692,405 + AZOBR_RS25120 0.39 -4.1
692,406 - AZOBR_RS25120 0.39 -2.6
692,690 + AZOBR_RS25120 0.49 -3.5
692,691 - AZOBR_RS25120 0.49 -2.6
692,691 - AZOBR_RS25120 0.49 -4.3
692,771 + AZOBR_RS25120 0.51 -4.4
692,771 + AZOBR_RS25120 0.51 -2.3
692,771 + AZOBR_RS25120 0.51 -3.3
692,771 + AZOBR_RS25120 0.51 -4.0
692,771 + AZOBR_RS25120 0.51 -3.3
692,772 - AZOBR_RS25120 0.51 -1.6
692,772 - AZOBR_RS25120 0.51 -2.5
692,909 + AZOBR_RS25120 0.56 -3.0
693,056 + AZOBR_RS25120 0.61 -3.2
693,056 + AZOBR_RS25120 0.61 -0.9
693,057 - AZOBR_RS25120 0.61 -2.3
693,345 - AZOBR_RS25120 0.71 -3.1
693,392 + AZOBR_RS25120 0.73 -3.8
693,392 + AZOBR_RS25120 0.73 -3.1
693,392 + AZOBR_RS25120 0.73 -2.6
693,393 - AZOBR_RS25120 0.73 -2.7
693,393 - AZOBR_RS25120 0.73 -2.3
693,495 - AZOBR_RS25120 0.76 -1.1
694,061 + -3.3
694,083 - -2.4
694,083 - -4.2
694,160 + -3.0
694,457 + -0.6
694,548 + -0.2
694,548 + -0.7
694,548 + -0.2
694,548 + -0.1
694,549 - -0.5
694,549 - -1.2
694,549 - -0.3
694,549 - -0.5
694,549 - -0.1
694,908 + -0.1
694,951 - AZOBR_RS25125 0.25 -0.2
695,088 + AZOBR_RS25125 0.33 -1.2
695,169 + AZOBR_RS25125 0.38 -1.2
695,169 + AZOBR_RS25125 0.38 -2.1
695,170 - AZOBR_RS25125 0.38 -0.3
695,170 - AZOBR_RS25125 0.38 +0.2
695,170 - AZOBR_RS25125 0.38 -2.2
695,170 - AZOBR_RS25125 0.38 +0.1

Or see this region's nucleotide sequence