Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01680 and AZOBR_RS01685 overlap by 1 nucleotides AZOBR_RS01685 and AZOBR_RS01690 overlap by 8 nucleotides AZOBR_RS01690 and AZOBR_RS01695 are separated by 30 nucleotides AZOBR_RS01695 and AZOBR_RS01700 are separated by 171 nucleotides
AZOBR_RS01680: AZOBR_RS01680 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 344,236 to 344,985
_RS01680
AZOBR_RS01685: AZOBR_RS01685 - imidazole glycerol phosphate synthase, at 344,985 to 345,782
_RS01685
AZOBR_RS01690: AZOBR_RS01690 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) <small>(from data)</small>, at 345,775 to 346,116
_RS01690
AZOBR_RS01695: AZOBR_RS01695 - hypothetical protein, at 346,147 to 346,515
_RS01695
AZOBR_RS01700: AZOBR_RS01700 - hypothetical protein, at 346,687 to 347,484
_RS01700
Position (kb) 345
346
347 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 345.171 kb on + strand, within AZOBR_RS01685 at 345.171 kb on + strand, within AZOBR_RS01685 at 345.171 kb on + strand, within AZOBR_RS01685 at 345.172 kb on - strand, within AZOBR_RS01685 at 345.172 kb on - strand, within AZOBR_RS01685 at 345.172 kb on - strand, within AZOBR_RS01685 at 345.172 kb on - strand, within AZOBR_RS01685 at 345.458 kb on + strand, within AZOBR_RS01685 at 345.459 kb on - strand, within AZOBR_RS01685 at 345.684 kb on + strand, within AZOBR_RS01685 at 345.685 kb on - strand, within AZOBR_RS01685 at 345.685 kb on - strand, within AZOBR_RS01685 at 345.787 kb on - strand at 345.809 kb on + strand at 345.809 kb on + strand at 345.810 kb on - strand, within AZOBR_RS01690 at 345.823 kb on + strand, within AZOBR_RS01690 at 345.823 kb on + strand, within AZOBR_RS01690 at 345.868 kb on + strand, within AZOBR_RS01690 at 345.868 kb on + strand, within AZOBR_RS01690 at 345.868 kb on + strand, within AZOBR_RS01690 at 345.868 kb on + strand, within AZOBR_RS01690 at 345.869 kb on - strand, within AZOBR_RS01690 at 345.869 kb on - strand, within AZOBR_RS01690 at 345.869 kb on - strand, within AZOBR_RS01690 at 345.869 kb on - strand, within AZOBR_RS01690 at 345.869 kb on - strand, within AZOBR_RS01690 at 345.869 kb on - strand, within AZOBR_RS01690 at 346.000 kb on + strand, within AZOBR_RS01690 at 346.001 kb on - strand, within AZOBR_RS01690 at 346.001 kb on - strand, within AZOBR_RS01690 at 346.159 kb on + strand at 346.159 kb on + strand at 346.159 kb on + strand at 346.159 kb on + strand at 346.160 kb on - strand at 346.160 kb on - strand at 346.300 kb on + strand, within AZOBR_RS01695 at 346.528 kb on - strand at 346.695 kb on - strand at 346.695 kb on - strand at 346.770 kb on - strand, within AZOBR_RS01700 at 346.970 kb on + strand, within AZOBR_RS01700 at 346.970 kb on + strand, within AZOBR_RS01700 at 346.971 kb on - strand, within AZOBR_RS01700 at 346.971 kb on - strand, within AZOBR_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 345,171 + AZOBR_RS01685 0.23 -2.1 345,171 + AZOBR_RS01685 0.23 -2.5 345,171 + AZOBR_RS01685 0.23 -1.3 345,172 - AZOBR_RS01685 0.23 -3.5 345,172 - AZOBR_RS01685 0.23 -2.4 345,172 - AZOBR_RS01685 0.23 -4.8 345,172 - AZOBR_RS01685 0.23 -4.0 345,458 + AZOBR_RS01685 0.59 -3.6 345,459 - AZOBR_RS01685 0.59 -1.4 345,684 + AZOBR_RS01685 0.88 -2.4 345,685 - AZOBR_RS01685 0.88 -5.5 345,685 - AZOBR_RS01685 0.88 -3.6 345,787 - -1.6 345,809 + -2.3 345,809 + -4.3 345,810 - AZOBR_RS01690 0.10 -3.2 345,823 + AZOBR_RS01690 0.14 -2.7 345,823 + AZOBR_RS01690 0.14 -2.5 345,868 + AZOBR_RS01690 0.27 -4.8 345,868 + AZOBR_RS01690 0.27 -4.1 345,868 + AZOBR_RS01690 0.27 -3.8 345,868 + AZOBR_RS01690 0.27 -1.1 345,869 - AZOBR_RS01690 0.27 -4.6 345,869 - AZOBR_RS01690 0.27 -3.8 345,869 - AZOBR_RS01690 0.27 -2.9 345,869 - AZOBR_RS01690 0.27 -5.8 345,869 - AZOBR_RS01690 0.27 -3.7 345,869 - AZOBR_RS01690 0.27 -7.2 346,000 + AZOBR_RS01690 0.66 -3.3 346,001 - AZOBR_RS01690 0.66 -0.8 346,001 - AZOBR_RS01690 0.66 -3.4 346,159 + -0.3 346,159 + -2.4 346,159 + +0.2 346,159 + -0.5 346,160 - -0.0 346,160 - +0.6 346,300 + AZOBR_RS01695 0.41 -0.5 346,528 - +0.6 346,695 - +0.1 346,695 - -0.2 346,770 - AZOBR_RS01700 0.10 +0.1 346,970 + AZOBR_RS01700 0.35 +0.3 346,970 + AZOBR_RS01700 0.35 -0.3 346,971 - AZOBR_RS01700 0.36 -0.9 346,971 - AZOBR_RS01700 0.36 -0.1
Or see this region's nucleotide sequence