Experiment: nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3635 and Shewana3_3636 are separated by 145 nucleotides Shewana3_3636 and Shewana3_3637 are separated by 168 nucleotides Shewana3_3637 and Shewana3_3638 are separated by 1 nucleotides
Shewana3_3635: Shewana3_3635 - hypothetical protein (RefSeq), at 4,366,444 to 4,366,983
_3635
Shewana3_3636: Shewana3_3636 - hypothetical protein (RefSeq), at 4,367,129 to 4,367,530
_3636
Shewana3_3637: Shewana3_3637 - hypothetical protein (RefSeq), at 4,367,699 to 4,368,850
_3637
Shewana3_3638: Shewana3_3638 - ABC-2 type transporter (RefSeq), at 4,368,852 to 4,370,147
_3638
Position (kb)
4367
4368
4369 Strain fitness (log2 ratio)
-2
-1
0
1 at 4366.726 kb on - strand, within Shewana3_3635 at 4366.765 kb on - strand, within Shewana3_3635 at 4366.914 kb on - strand, within Shewana3_3635 at 4366.914 kb on - strand, within Shewana3_3635 at 4366.961 kb on - strand at 4366.964 kb on + strand at 4367.254 kb on - strand, within Shewana3_3636 at 4367.270 kb on - strand, within Shewana3_3636 at 4367.272 kb on + strand, within Shewana3_3636 at 4367.283 kb on + strand, within Shewana3_3636 at 4367.464 kb on + strand, within Shewana3_3636 at 4367.789 kb on - strand at 4367.817 kb on - strand, within Shewana3_3637 at 4367.958 kb on - strand, within Shewana3_3637 at 4368.018 kb on - strand, within Shewana3_3637 at 4368.186 kb on + strand, within Shewana3_3637 at 4368.281 kb on - strand, within Shewana3_3637 at 4368.294 kb on + strand, within Shewana3_3637 at 4368.321 kb on - strand, within Shewana3_3637 at 4368.499 kb on + strand, within Shewana3_3637 at 4368.752 kb on - strand at 4368.797 kb on - strand at 4368.876 kb on - strand at 4369.206 kb on - strand, within Shewana3_3638 at 4369.259 kb on + strand, within Shewana3_3638 at 4369.267 kb on - strand, within Shewana3_3638 at 4369.423 kb on + strand, within Shewana3_3638 at 4369.423 kb on + strand, within Shewana3_3638 at 4369.464 kb on - strand, within Shewana3_3638 at 4369.487 kb on - strand, within Shewana3_3638 at 4369.534 kb on + strand, within Shewana3_3638 at 4369.624 kb on - strand, within Shewana3_3638 at 4369.780 kb on + strand, within Shewana3_3638 at 4369.788 kb on - strand, within Shewana3_3638 at 4369.788 kb on - strand, within Shewana3_3638 at 4369.788 kb on - strand, within Shewana3_3638 at 4369.793 kb on - strand, within Shewana3_3638 at 4369.813 kb on + strand, within Shewana3_3638
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 300 mM remove 4,366,726 - Shewana3_3635 0.52 +1.5 4,366,765 - Shewana3_3635 0.59 -0.4 4,366,914 - Shewana3_3635 0.87 +1.3 4,366,914 - Shewana3_3635 0.87 +0.4 4,366,961 - -0.2 4,366,964 + -0.5 4,367,254 - Shewana3_3636 0.31 -0.3 4,367,270 - Shewana3_3636 0.35 +0.1 4,367,272 + Shewana3_3636 0.36 -1.0 4,367,283 + Shewana3_3636 0.38 -0.8 4,367,464 + Shewana3_3636 0.83 -0.7 4,367,789 - -0.2 4,367,817 - Shewana3_3637 0.10 -0.2 4,367,958 - Shewana3_3637 0.22 -0.1 4,368,018 - Shewana3_3637 0.28 +0.4 4,368,186 + Shewana3_3637 0.42 +0.7 4,368,281 - Shewana3_3637 0.51 +1.3 4,368,294 + Shewana3_3637 0.52 -2.0 4,368,321 - Shewana3_3637 0.54 +0.9 4,368,499 + Shewana3_3637 0.69 +0.9 4,368,752 - +0.3 4,368,797 - -0.5 4,368,876 - +0.5 4,369,206 - Shewana3_3638 0.27 +0.9 4,369,259 + Shewana3_3638 0.31 +0.2 4,369,267 - Shewana3_3638 0.32 +0.7 4,369,423 + Shewana3_3638 0.44 +0.7 4,369,423 + Shewana3_3638 0.44 -0.4 4,369,464 - Shewana3_3638 0.47 +0.3 4,369,487 - Shewana3_3638 0.49 +0.6 4,369,534 + Shewana3_3638 0.53 -0.3 4,369,624 - Shewana3_3638 0.60 +0.4 4,369,780 + Shewana3_3638 0.72 -0.1 4,369,788 - Shewana3_3638 0.72 -1.3 4,369,788 - Shewana3_3638 0.72 -0.1 4,369,788 - Shewana3_3638 0.72 +0.7 4,369,793 - Shewana3_3638 0.73 +0.5 4,369,813 + Shewana3_3638 0.74 -0.5
Or see this region's nucleotide sequence