Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2637

Experiment: nitrate 300 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 300 mM
3,146,398	-		Shewana3_2636	0.82	-2.6
3,146,398	-		Shewana3_2636	0.82	+1.4
3,146,403	-		Shewana3_2636	0.83	+0.1
3,146,463	-		Shewana3_2636	0.87	+1.0
3,146,463	-		Shewana3_2636	0.87	+0.4
3,146,464	-		Shewana3_2636	0.87	-0.7
3,146,465	-		Shewana3_2636	0.87	-0.0
3,146,477	-		Shewana3_2636	0.88	+0.1
3,146,501	+		Shewana3_2636	0.89	+0.1
3,146,503	-		Shewana3_2636	0.89	-1.1
3,146,509	-		Shewana3_2636	0.90	-0.0
3,146,509	-		Shewana3_2636	0.90	-0.6
3,146,509	-		Shewana3_2636	0.90	+1.1
3,146,509	-		Shewana3_2636	0.90	-0.1
3,146,509	-		Shewana3_2636	0.90	-0.5
3,146,509	-		Shewana3_2636	0.90	+1.1
3,146,514	-				-1.2
3,146,514	-				+0.1
3,146,524	-				+1.1
3,146,525	-				-0.1
3,146,533	-				-0.1
3,146,535	-				-0.1
3,146,535	-				+0.9
3,146,556	-				+0.8
3,146,584	+				+2.1
3,146,584	+				-0.5
3,146,584	+				+1.1
3,146,584	+				-0.3
3,146,584	+				+1.1
3,146,592	-				+0.4
3,146,592	-				-0.5
3,146,592	-				-0.0
3,146,592	-				-0.9
3,146,592	-				-0.2
3,146,592	-				-0.1
3,146,593	-				-0.5
3,146,622	+				-1.2
3,146,627	+				+1.1
3,146,631	-				+0.0
3,146,635	-				+0.7
3,146,644	-				+0.2
3,146,644	-				+1.0
3,146,671	+				+0.1
3,146,671	+				-0.2
3,146,679	-				-0.5
3,146,710	-				+0.4
3,146,713	+				+2.1
3,146,715	-				+0.5
3,146,731	-				-2.7
3,146,763	+				+0.4
3,146,778	+				-0.2
3,146,784	+				-0.2
3,146,786	-				+0.2
3,146,810	+				+1.1
3,146,825	+				-0.9
3,146,825	+				-0.6
3,146,825	+				-0.5
3,146,828	-				+0.4
3,146,828	-				-0.0
3,146,833	-				+0.2
3,146,833	-				-0.4
3,146,833	-				-0.1
3,146,833	-				+0.3
3,146,833	-				-0.1
3,146,847	+				-1.5
3,146,855	-				+0.3
3,146,855	-				-0.0
3,146,855	-				+0.1
3,146,858	+				+0.1
3,146,858	+				+0.1
3,146,860	+				-0.3
3,146,866	-				-0.0
3,146,866	-				-0.6
3,146,866	-				-0.0
3,146,866	-				-1.2
3,146,884	-				-0.0
3,146,884	-				+0.8
3,146,884	-				-0.5
3,146,884	-				+0.1
3,146,884	-				+0.0
3,146,884	-				+0.1
3,146,884	-				+0.1
3,146,922	+				-2.2
3,146,930	-				+0.3
3,146,930	-				+0.7
3,146,930	-				-1.5
3,146,930	-				+0.4
3,146,930	-				-0.8
3,146,930	-				+0.5
3,146,930	-				-0.7
3,146,930	-				+0.4
3,146,930	-				+0.8
3,146,930	-				-0.3
3,146,930	-				-0.5
3,146,930	-				-1.0
3,146,930	-				+0.7
3,146,930	-				+0.4
3,146,953	+				+2.4
3,146,961	-				+1.5
3,146,961	-				-0.1
3,146,973	-				-0.5
3,146,984	-				-0.5
3,146,984	-				-1.4
3,146,992	-				+0.6
3,146,992	-				+0.1
3,146,996	+				+1.7
3,147,003	-				+0.2
3,147,003	-				-0.1
3,147,003	-				-1.8
3,147,003	-				-0.9
3,147,003	-				-0.3
3,147,003	-				-0.0
3,147,003	-				-0.1
3,147,003	-				-0.1
3,147,003	-				+0.4
3,147,004	-				-1.2
3,147,004	-				+0.2
3,147,004	-				-0.2
3,147,004	-				+0.2
3,147,004	-				+0.1
3,147,004	-				+0.5
3,147,054	-				-0.2
3,147,054	-				+0.8
3,147,146	+				-1.5
3,147,154	-				-1.2
3,147,154	-				+0.9
3,147,154	-				+0.6
3,147,165	+				-1.2
3,147,173	-				+0.3
3,147,242	+				-0.6
3,147,250	-				+1.3
3,147,250	-				+0.7
3,147,250	-				+0.2
3,147,253	+				-0.5
3,147,270	+				+1.1
3,147,291	-				+0.5
3,147,307	+				-0.3
3,147,307	+				+1.1
3,147,307	+				-0.5
3,147,307	+				-1.5
3,147,309	+				+0.2
3,147,309	+				+0.1
3,147,309	+				-2.1
3,147,309	+				+0.1
3,147,309	+				+0.1
3,147,309	+				+1.1
3,147,309	+				-0.5
3,147,309	+				-0.8
3,147,309	+				+1.1
3,147,315	-				+0.0
3,147,315	-				-0.1
3,147,317	-				+0.2
3,147,317	-				-0.1
3,147,317	-				-1.1
3,147,317	-				-0.1
3,147,317	-				+0.4
3,147,317	-				-0.5
3,147,317	-				-0.2
3,147,317	-				+1.0
3,147,317	-				+0.0
3,147,317	-				-0.0
3,147,317	-				+0.2
3,147,317	-				+0.3
3,147,317	-				+0.7
3,147,317	-				-0.2
3,147,317	-				+0.6
3,147,317	-				+0.1
3,147,317	-				+0.8
3,147,317	-				-0.4
3,147,317	-				+0.5
3,147,317	-				-0.6
3,147,317	-				+0.3
3,147,317	-				-0.7
3,147,327	+				-0.6
3,147,329	-				+0.4
3,147,329	-				+0.1
3,147,330	-				+0.2
3,147,332	+				+2.1
3,147,332	+				-0.1
3,147,332	+				+0.4
3,147,332	+				-1.6
3,147,332	+				-1.5
3,147,333	+				+0.1
3,147,333	+				-1.2
3,147,340	-				-0.0
3,147,340	-				-2.5
3,147,340	-				+1.1
3,147,340	-				-0.4
3,147,340	-				+1.7
3,147,340	-				-0.0
3,147,340	-				+0.3
3,147,340	-				-0.1
3,147,340	-				-0.8
3,147,340	-				+0.4
3,147,340	-				-1.3
3,147,340	-				+1.2
3,147,340	-				-0.8
3,147,340	-				+0.5
3,147,340	-				-0.8
3,147,340	-				+0.7
3,147,340	-				-1.2
3,147,340	-				+0.6
3,147,340	-				+1.1
3,147,340	-				-0.4
3,147,340	-				-0.1
3,147,340	-				-0.5
3,147,340	-				-1.5
3,147,340	-				+1.1
3,147,340	-				-0.8
3,147,340	-				+0.2
3,147,340	-				+0.1
3,147,340	-				+0.4
3,147,340	-				-1.7
3,147,340	-				-1.0
3,147,341	-				+0.4
3,147,341	-				-0.8
3,147,341	-				-2.0
3,147,341	-				-0.5
3,147,341	-				-2.2
3,147,341	-				+0.0
3,147,341	-				-0.2
3,147,341	-				-0.5
3,147,341	-				+1.7
3,147,341	-				-0.9
3,147,341	-				-0.3
3,147,341	-				+0.1
3,147,341	-				+0.4
3,147,365	+				-0.2
3,147,366	+				-1.3
3,147,373	-				+0.7
3,147,374	-				-1.9
3,147,463	-		Shewana3_2637	0.16	+0.3
3,147,465	+		Shewana3_2637	0.16	+0.1
3,147,489	+		Shewana3_2637	0.20	-1.2
3,147,497	-		Shewana3_2637	0.22	+0.5
3,147,497	-		Shewana3_2637	0.22	-0.1
3,147,518	-		Shewana3_2637	0.26	+1.1
3,147,518	-		Shewana3_2637	0.26	+0.3
3,147,518	-		Shewana3_2637	0.26	-1.0
3,147,542	-		Shewana3_2637	0.30	+0.2
3,147,542	-		Shewana3_2637	0.30	-0.7
3,147,542	-		Shewana3_2637	0.30	+0.1
3,147,703	-		Shewana3_2637	0.59	+0.2
3,147,768	-		Shewana3_2637	0.71	+0.5
3,147,874	-				+0.5
3,147,876	+				+1.1
3,147,886	+				+0.1
3,147,894	-				+1.1
3,147,895	-				+0.1
3,147,901	+				-0.5
3,147,909	-				+0.5
3,147,942	-				-0.3
3,148,017	+				-0.5
3,148,017	+				-1.4
3,148,017	+				-1.0
3,148,017	+				+1.1
3,148,024	+				+0.9
3,148,025	-				-0.6
3,148,025	-				-0.4
3,148,025	-				-0.6
3,148,025	-				-1.1
3,148,037	+				-0.5
3,148,049	+				-0.1
3,148,089	+				-1.9
3,148,089	+				-1.1
3,148,089	+				+0.1
3,148,089	+				+0.1
3,148,089	+				+0.1
3,148,089	+				+0.3
3,148,089	+				-1.2
3,148,089	+				+0.1
3,148,089	+				-2.0
3,148,097	-				-0.8
3,148,097	-				-0.5
3,148,097	-				+0.4
3,148,097	-				-0.6
3,148,097	-				-0.9
3,148,097	-				-2.2
3,148,099	+				+0.5
3,148,099	+				-1.5
3,148,099	+				-0.9
3,148,099	+				+0.1
3,148,107	-				-0.5
3,148,107	-				+1.1
3,148,107	-				+1.1
3,148,113	+				+0.7
3,148,128	+				+1.1
3,148,147	+				-0.5
3,148,155	+				-2.2
3,148,155	+				-1.5
3,148,155	-				-1.9
3,148,163	-				+0.0
3,148,197	-				+0.4
3,148,216	-				+0.5
3,148,292	+				+1.1
3,148,300	-				-0.9
3,148,307	+				+0.1
3,148,320	-				-0.2
3,148,379	-		Shewana3_2638	0.13	-1.3
3,148,385	-		Shewana3_2638	0.14	+0.0
3,148,387	-		Shewana3_2638	0.14	-0.2
3,148,391	-		Shewana3_2638	0.14	+0.1
3,148,429	+		Shewana3_2638	0.17	+0.0
3,148,429	+		Shewana3_2638	0.17	+1.1
3,148,429	+		Shewana3_2638	0.17	+0.1
3,148,437	-		Shewana3_2638	0.17	-0.5
3,148,437	-		Shewana3_2638	0.17	-1.2
3,148,437	-		Shewana3_2638	0.17	+0.7
3,148,437	-		Shewana3_2638	0.17	+1.1
3,148,437	-		Shewana3_2638	0.17	-0.6
3,148,463	+		Shewana3_2638	0.19	-1.7
3,148,479	+		Shewana3_2638	0.20	+0.7
3,148,487	-		Shewana3_2638	0.21	+1.4
3,148,520	+		Shewana3_2638	0.23	+0.1
3,148,520	+		Shewana3_2638	0.23	+0.1
3,148,542	+		Shewana3_2638	0.25	+1.1
3,148,550	-		Shewana3_2638	0.26	-0.9
3,148,566	+		Shewana3_2638	0.27	+1.1
3,148,566	+		Shewana3_2638	0.27	+1.1
3,148,566	+		Shewana3_2638	0.27	+1.1
3,148,566	+		Shewana3_2638	0.27	-0.9
3,148,566	+		Shewana3_2638	0.27	+1.1
3,148,566	+		Shewana3_2638	0.27	-0.4
3,148,566	+		Shewana3_2638	0.27	+1.1
3,148,574	-		Shewana3_2638	0.27	+0.1
3,148,574	-		Shewana3_2638	0.27	+0.6
3,148,574	-		Shewana3_2638	0.27	-2.5
3,148,574	-		Shewana3_2638	0.27	-2.2
3,148,574	-		Shewana3_2638	0.27	-0.9
3,148,574	-		Shewana3_2638	0.27	+0.4
3,148,574	-		Shewana3_2638	0.27	-2.1
3,148,574	-		Shewana3_2638	0.27	+0.6
3,148,574	-		Shewana3_2638	0.27	-1.0
3,148,574	-		Shewana3_2638	0.27	+1.1
3,148,587	-		Shewana3_2638	0.28	-0.8
3,148,589	+		Shewana3_2638	0.28	+0.2
3,148,617	+		Shewana3_2638	0.30	+1.1
3,148,625	-		Shewana3_2638	0.31	-0.9
3,148,676	+		Shewana3_2638	0.35	+1.1
3,148,677	-		Shewana3_2638	0.35	-1.5
3,148,683	+		Shewana3_2638	0.35	+0.1
3,148,684	-		Shewana3_2638	0.35	-0.5
3,148,684	-		Shewana3_2638	0.35	-0.3
3,148,684	-		Shewana3_2638	0.35	-0.9
3,148,686	-		Shewana3_2638	0.35	+0.4
3,148,686	-		Shewana3_2638	0.35	-0.6
3,148,705	-		Shewana3_2638	0.37	+0.1
3,148,813	+		Shewana3_2638	0.45	-0.4
3,148,828	-		Shewana3_2638	0.46	-0.5
3,148,833	-		Shewana3_2638	0.46	+0.7
3,148,884	+		Shewana3_2638	0.50	+1.1
3,148,891	+		Shewana3_2638	0.50	+1.1
3,148,894	+		Shewana3_2638	0.50	-1.4
3,148,894	+		Shewana3_2638	0.50	-0.5
3,148,902	-		Shewana3_2638	0.51	-0.5
3,148,915	+		Shewana3_2638	0.52	+1.1
3,148,923	+		Shewana3_2638	0.53	+0.1