Experiment: nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2391 and Shewana3_2392 are separated by 376 nucleotides Shewana3_2392 and Shewana3_2393 are separated by 95 nucleotides
Shewana3_2391: Shewana3_2391 - peptidase M22, glycoprotease (RefSeq), at 2,869,767 to 2,870,477
_2391
Shewana3_2392: Shewana3_2392 - delta-aminolevulinic acid dehydratase (RefSeq), at 2,870,854 to 2,871,852
_2392
Shewana3_2393: Shewana3_2393 - bifunctional methionine sulfoxide reductase B/A protein (RefSeq), at 2,871,948 to 2,872,853
_2393
Position (kb)
2870
2871
2872 Strain fitness (log2 ratio)
-1
0
1 at 2870.536 kb on - strand at 2870.541 kb on - strand at 2870.662 kb on + strand at 2871.133 kb on + strand, within Shewana3_2392 at 2871.171 kb on - strand, within Shewana3_2392 at 2871.251 kb on + strand, within Shewana3_2392 at 2871.276 kb on - strand, within Shewana3_2392 at 2871.350 kb on - strand, within Shewana3_2392 at 2871.395 kb on - strand, within Shewana3_2392 at 2871.395 kb on - strand, within Shewana3_2392 at 2871.527 kb on - strand, within Shewana3_2392 at 2871.527 kb on - strand, within Shewana3_2392 at 2871.940 kb on + strand at 2871.948 kb on - strand at 2872.119 kb on - strand, within Shewana3_2393 at 2872.416 kb on - strand, within Shewana3_2393 at 2872.462 kb on - strand, within Shewana3_2393 at 2872.614 kb on - strand, within Shewana3_2393 at 2872.774 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 300 mM remove 2,870,536 - +0.0 2,870,541 - +1.1 2,870,662 + +0.0 2,871,133 + Shewana3_2392 0.28 +0.2 2,871,171 - Shewana3_2392 0.32 +1.0 2,871,251 + Shewana3_2392 0.40 +0.3 2,871,276 - Shewana3_2392 0.42 -1.0 2,871,350 - Shewana3_2392 0.50 +0.3 2,871,395 - Shewana3_2392 0.54 +0.7 2,871,395 - Shewana3_2392 0.54 +0.0 2,871,527 - Shewana3_2392 0.67 +1.0 2,871,527 - Shewana3_2392 0.67 +0.4 2,871,940 + +0.6 2,871,948 - +0.6 2,872,119 - Shewana3_2393 0.19 +0.2 2,872,416 - Shewana3_2393 0.52 +0.9 2,872,462 - Shewana3_2393 0.57 +0.8 2,872,614 - Shewana3_2393 0.74 -0.0 2,872,774 + +0.8
Or see this region's nucleotide sequence