Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2296

Experiment: nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2295 and Shewana3_2296 are separated by 111 nucleotidesShewana3_2296 and Shewana3_2297 are separated by 399 nucleotidesShewana3_2297 and Shewana3_2298 are separated by 101 nucleotides Shewana3_2295: Shewana3_2295 - L-serine ammonia-lyase (RefSeq), at 2,758,463 to 2,759,839 _2295 Shewana3_2296: Shewana3_2296 - hypothetical protein (RefSeq), at 2,759,951 to 2,760,688 _2296 Shewana3_2297: Shewana3_2297 - ISPsy11, transposase OrfA (RefSeq), at 2,761,088 to 2,761,480 _2297 Shewana3_2298: Shewana3_2298 - integrase catalytic subunit (RefSeq), at 2,761,582 to 2,762,304 _2298 Position (kb) 2759 2760 2761Strain fitness (log2 ratio) -2 -1 0 1at 2759.061 kb on + strand, within Shewana3_2295at 2759.164 kb on + strand, within Shewana3_2295at 2759.373 kb on - strand, within Shewana3_2295at 2759.606 kb on + strand, within Shewana3_2295at 2759.702 kb on + strandat 2759.833 kb on + strandat 2760.051 kb on - strand, within Shewana3_2296at 2760.076 kb on + strand, within Shewana3_2296at 2760.084 kb on - strand, within Shewana3_2296at 2760.084 kb on - strand, within Shewana3_2296at 2760.094 kb on - strand, within Shewana3_2296at 2760.110 kb on + strand, within Shewana3_2296at 2760.165 kb on - strand, within Shewana3_2296at 2760.464 kb on - strand, within Shewana3_2296at 2760.466 kb on - strand, within Shewana3_2296at 2760.559 kb on - strand, within Shewana3_2296at 2760.860 kb on + strandat 2760.964 kb on + strandat 2760.964 kb on + strandat 2760.972 kb on - strandat 2761.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 300 mM
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2,759,061 + Shewana3_2295 0.43 -2.5
2,759,164 + Shewana3_2295 0.51 -1.8
2,759,373 - Shewana3_2295 0.66 +1.1
2,759,606 + Shewana3_2295 0.83 -2.1
2,759,702 + -1.8
2,759,833 + +0.1
2,760,051 - Shewana3_2296 0.14 +0.9
2,760,076 + Shewana3_2296 0.17 +0.6
2,760,084 - Shewana3_2296 0.18 -0.7
2,760,084 - Shewana3_2296 0.18 +0.3
2,760,094 - Shewana3_2296 0.19 -1.5
2,760,110 + Shewana3_2296 0.22 +0.5
2,760,165 - Shewana3_2296 0.29 +0.1
2,760,464 - Shewana3_2296 0.70 +0.1
2,760,466 - Shewana3_2296 0.70 +0.1
2,760,559 - Shewana3_2296 0.82 +1.1
2,760,860 + +1.3
2,760,964 + +0.4
2,760,964 + +0.3
2,760,972 - +0.3
2,761,050 - -0.1

Or see this region's nucleotide sequence