Experiment: nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1772 and Shewana3_1773 overlap by 14 nucleotides Shewana3_1773 and Shewana3_1774 are separated by 1 nucleotides Shewana3_1774 and Shewana3_1775 are separated by 206 nucleotides
Shewana3_1772: Shewana3_1772 - hypothetical protein (RefSeq), at 2,086,673 to 2,089,309
_1772
Shewana3_1773: Shewana3_1773 - paraquat-inducible protein A (RefSeq), at 2,089,296 to 2,089,913
_1773
Shewana3_1774: Shewana3_1774 - paraquat-inducible protein A (RefSeq), at 2,089,915 to 2,090,550
_1774
Shewana3_1775: Shewana3_1775 - YebG family protein (RefSeq), at 2,090,757 to 2,091,056
_1775
Position (kb)
2089
2090 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2088.334 kb on + strand at 2088.747 kb on - strand, within Shewana3_1772 at 2088.857 kb on + strand, within Shewana3_1772 at 2088.893 kb on - strand, within Shewana3_1772 at 2088.952 kb on + strand, within Shewana3_1772 at 2088.967 kb on - strand, within Shewana3_1772 at 2089.216 kb on + strand at 2089.224 kb on - strand at 2089.242 kb on + strand at 2089.326 kb on + strand at 2089.638 kb on + strand, within Shewana3_1773 at 2089.638 kb on + strand, within Shewana3_1773 at 2089.646 kb on + strand, within Shewana3_1773 at 2089.734 kb on - strand, within Shewana3_1773 at 2089.808 kb on + strand, within Shewana3_1773 at 2090.280 kb on + strand, within Shewana3_1774 at 2090.389 kb on - strand, within Shewana3_1774 at 2090.690 kb on - strand at 2090.847 kb on + strand, within Shewana3_1775 at 2090.875 kb on - strand, within Shewana3_1775
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 300 mM remove 2,088,334 + +0.2 2,088,747 - Shewana3_1772 0.79 +0.2 2,088,857 + Shewana3_1772 0.83 +0.6 2,088,893 - Shewana3_1772 0.84 -0.7 2,088,952 + Shewana3_1772 0.86 -1.1 2,088,967 - Shewana3_1772 0.87 -0.5 2,089,216 + -0.4 2,089,224 - +0.2 2,089,242 + +1.2 2,089,326 + +2.2 2,089,638 + Shewana3_1773 0.55 -0.4 2,089,638 + Shewana3_1773 0.55 +0.2 2,089,646 + Shewana3_1773 0.57 +1.2 2,089,734 - Shewana3_1773 0.71 -3.2 2,089,808 + Shewana3_1773 0.83 +0.2 2,090,280 + Shewana3_1774 0.57 +0.2 2,090,389 - Shewana3_1774 0.75 +0.0 2,090,690 - -1.0 2,090,847 + Shewana3_1775 0.30 +0.1 2,090,875 - Shewana3_1775 0.39 -0.4
Or see this region's nucleotide sequence