Experiment: nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1734 and Shewana3_1735 are separated by 181 nucleotides Shewana3_1735 and Shewana3_1736 are separated by 124 nucleotides
Shewana3_1734: Shewana3_1734 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 2,042,126 to 2,043,190
_1734
Shewana3_1735: Shewana3_1735 - hypothetical protein (RefSeq), at 2,043,372 to 2,044,184
_1735
Shewana3_1736: Shewana3_1736 - phosphoenolpyruvate synthase (RefSeq), at 2,044,309 to 2,046,678
_1736
Position (kb)
2043
2044
2045 Strain fitness (log2 ratio)
-1
0
1 at 2042.421 kb on - strand, within Shewana3_1734 at 2042.651 kb on + strand, within Shewana3_1734 at 2042.691 kb on - strand, within Shewana3_1734 at 2042.710 kb on + strand, within Shewana3_1734 at 2042.951 kb on + strand, within Shewana3_1734 at 2042.978 kb on + strand, within Shewana3_1734 at 2043.032 kb on + strand, within Shewana3_1734 at 2043.120 kb on + strand at 2043.143 kb on - strand at 2043.254 kb on + strand at 2043.256 kb on + strand at 2043.256 kb on + strand at 2043.264 kb on - strand at 2043.264 kb on - strand at 2043.363 kb on - strand at 2043.438 kb on - strand at 2043.512 kb on + strand, within Shewana3_1735 at 2043.512 kb on + strand, within Shewana3_1735 at 2044.243 kb on - strand at 2044.450 kb on + strand at 2044.563 kb on + strand, within Shewana3_1736 at 2044.600 kb on + strand, within Shewana3_1736 at 2044.600 kb on + strand, within Shewana3_1736 at 2044.600 kb on + strand, within Shewana3_1736 at 2044.832 kb on + strand, within Shewana3_1736 at 2044.847 kb on + strand, within Shewana3_1736 at 2044.855 kb on - strand, within Shewana3_1736 at 2044.933 kb on + strand, within Shewana3_1736 at 2045.094 kb on + strand, within Shewana3_1736
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 300 mM remove 2,042,421 - Shewana3_1734 0.28 +0.0 2,042,651 + Shewana3_1734 0.49 +1.2 2,042,691 - Shewana3_1734 0.53 -0.2 2,042,710 + Shewana3_1734 0.55 -0.4 2,042,951 + Shewana3_1734 0.77 -1.4 2,042,978 + Shewana3_1734 0.80 +0.2 2,043,032 + Shewana3_1734 0.85 +0.2 2,043,120 + +1.2 2,043,143 - -0.2 2,043,254 + -0.6 2,043,256 + +0.2 2,043,256 + +0.9 2,043,264 - +0.2 2,043,264 - +0.7 2,043,363 - +0.4 2,043,438 - +0.4 2,043,512 + Shewana3_1735 0.17 -1.1 2,043,512 + Shewana3_1735 0.17 +1.2 2,044,243 - -0.3 2,044,450 + +0.5 2,044,563 + Shewana3_1736 0.11 +0.4 2,044,600 + Shewana3_1736 0.12 -0.1 2,044,600 + Shewana3_1736 0.12 -0.1 2,044,600 + Shewana3_1736 0.12 -0.4 2,044,832 + Shewana3_1736 0.22 -0.7 2,044,847 + Shewana3_1736 0.23 -1.1 2,044,855 - Shewana3_1736 0.23 +1.2 2,044,933 + Shewana3_1736 0.26 -0.3 2,045,094 + Shewana3_1736 0.33 -0.8
Or see this region's nucleotide sequence