Experiment: nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1646 and Shewana3_1647 are separated by 388 nucleotides Shewana3_1647 and Shewana3_1648 are separated by 47 nucleotides Shewana3_1648 and Shewana3_1649 are separated by 111 nucleotides
Shewana3_1646: Shewana3_1646 - hypothetical protein (RefSeq), at 1,936,816 to 1,938,744
_1646
Shewana3_1647: Shewana3_1647 - hypothetical protein (RefSeq), at 1,939,133 to 1,939,513
_1647
Shewana3_1648: Shewana3_1648 - arsenate reductase (RefSeq), at 1,939,561 to 1,939,911
_1648
Shewana3_1649: Shewana3_1649 - peptidase M48, Ste24p (RefSeq), at 1,940,023 to 1,941,492
_1649
Position (kb)
1939
1940 Strain fitness (log2 ratio)
-2
-1
0
1 at 1938.597 kb on + strand at 1938.597 kb on + strand at 1938.855 kb on - strand at 1939.078 kb on + strand at 1939.162 kb on + strand at 1939.312 kb on + strand, within Shewana3_1647 at 1939.394 kb on - strand, within Shewana3_1647 at 1939.409 kb on + strand, within Shewana3_1647 at 1939.422 kb on + strand, within Shewana3_1647 at 1939.465 kb on + strand, within Shewana3_1647 at 1939.500 kb on + strand at 1939.851 kb on + strand, within Shewana3_1648 at 1939.851 kb on + strand, within Shewana3_1648 at 1940.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 300 mM remove 1,938,597 + -0.6 1,938,597 + -0.0 1,938,855 - +1.0 1,939,078 + +0.2 1,939,162 + -0.1 1,939,312 + Shewana3_1647 0.47 -0.2 1,939,394 - Shewana3_1647 0.69 +0.9 1,939,409 + Shewana3_1647 0.72 +0.5 1,939,422 + Shewana3_1647 0.76 -1.1 1,939,465 + Shewana3_1647 0.87 +0.3 1,939,500 + -0.7 1,939,851 + Shewana3_1648 0.83 -2.6 1,939,851 + Shewana3_1648 0.83 -1.0 1,940,112 - +0.4
Or see this region's nucleotide sequence