Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1597

Experiment: nitrate 300 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1595 and Shewana3_1596 are separated by 231 nucleotidesShewana3_1596 and Shewana3_1597 are separated by 58 nucleotidesShewana3_1597 and Shewana3_1598 are separated by 10 nucleotidesShewana3_1598 and Shewana3_1599 overlap by 1 nucleotides Shewana3_1595: Shewana3_1595 - PKD domain-containing protein (RefSeq), at 1,871,397 to 1,874,243 _1595 Shewana3_1596: Shewana3_1596 - hypothetical protein (RefSeq), at 1,874,475 to 1,874,903 _1596 Shewana3_1597: Shewana3_1597 - hypothetical protein (RefSeq), at 1,874,962 to 1,875,858 _1597 Shewana3_1598: Shewana3_1598 - hypothetical protein (RefSeq), at 1,875,869 to 1,876,627 _1598 Shewana3_1599: Shewana3_1599 - hypothetical protein (RefSeq), at 1,876,627 to 1,877,166 _1599 Position (kb) 1874 1875 1876Strain fitness (log2 ratio) -1 0 1at 1874.148 kb on - strandat 1874.462 kb on - strandat 1874.486 kb on + strandat 1874.487 kb on + strandat 1874.496 kb on - strandat 1875.573 kb on - strand, within Shewana3_1597at 1875.827 kb on - strandat 1875.827 kb on - strandat 1875.827 kb on - strandat 1876.370 kb on + strand, within Shewana3_1598at 1876.671 kb on - strandat 1876.742 kb on + strand, within Shewana3_1599at 1876.745 kb on - strand, within Shewana3_1599

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 300 mM
remove
1,874,148 - -0.2
1,874,462 - +0.2
1,874,486 + -0.0
1,874,487 + +1.2
1,874,496 - +0.8
1,875,573 - Shewana3_1597 0.68 +0.5
1,875,827 - -0.7
1,875,827 - +0.4
1,875,827 - +0.2
1,876,370 + Shewana3_1598 0.66 +1.2
1,876,671 - -0.5
1,876,742 + Shewana3_1599 0.21 +1.2
1,876,745 - Shewana3_1599 0.22 +0.1

Or see this region's nucleotide sequence