Experiment: nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1494 and Shewana3_1495 overlap by 1 nucleotides Shewana3_1495 and Shewana3_1496 are separated by 3 nucleotides Shewana3_1496 and Shewana3_1497 are separated by 1 nucleotides
Shewana3_1494: Shewana3_1494 - hypothetical protein (RefSeq), at 1,741,408 to 1,742,421
_1494
Shewana3_1495: Shewana3_1495 - hypothetical protein (RefSeq), at 1,742,421 to 1,743,125
_1495
Shewana3_1496: Shewana3_1496 - 2Fe-2S iron-sulfur cluster binding domain-containing protein (RefSeq), at 1,743,129 to 1,743,626
_1496
Shewana3_1497: Shewana3_1497 - aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (RefSeq), at 1,743,628 to 1,745,874
_1497
Position (kb)
1743
1744 Strain fitness (log2 ratio)
-1
0
1 at 1742.178 kb on + strand, within Shewana3_1494 at 1742.238 kb on - strand, within Shewana3_1494 at 1742.374 kb on + strand at 1742.382 kb on - strand at 1742.713 kb on - strand, within Shewana3_1495 at 1742.798 kb on - strand, within Shewana3_1495 at 1742.830 kb on + strand, within Shewana3_1495 at 1743.120 kb on - strand at 1743.290 kb on - strand, within Shewana3_1496 at 1743.351 kb on + strand, within Shewana3_1496 at 1743.729 kb on - strand at 1743.762 kb on + strand at 1743.938 kb on - strand, within Shewana3_1497 at 1744.158 kb on + strand, within Shewana3_1497 at 1744.158 kb on + strand, within Shewana3_1497 at 1744.261 kb on + strand, within Shewana3_1497 at 1744.404 kb on + strand, within Shewana3_1497 at 1744.412 kb on - strand, within Shewana3_1497 at 1744.439 kb on + strand, within Shewana3_1497
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 300 mM remove 1,742,178 + Shewana3_1494 0.76 -0.1 1,742,238 - Shewana3_1494 0.82 +0.7 1,742,374 + +0.2 1,742,382 - +1.4 1,742,713 - Shewana3_1495 0.41 -0.4 1,742,798 - Shewana3_1495 0.53 +0.6 1,742,830 + Shewana3_1495 0.58 +0.5 1,743,120 - +0.4 1,743,290 - Shewana3_1496 0.32 +0.6 1,743,351 + Shewana3_1496 0.45 +0.7 1,743,729 - -0.0 1,743,762 + +0.2 1,743,938 - Shewana3_1497 0.14 +0.3 1,744,158 + Shewana3_1497 0.24 -1.2 1,744,158 + Shewana3_1497 0.24 +0.5 1,744,261 + Shewana3_1497 0.28 -0.1 1,744,404 + Shewana3_1497 0.35 +0.2 1,744,412 - Shewana3_1497 0.35 +1.2 1,744,439 + Shewana3_1497 0.36 -0.1
Or see this region's nucleotide sequence