Experiment: nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0352 and Shewana3_0353 are separated by 172 nucleotides Shewana3_0353 and Shewana3_0354 are separated by 59 nucleotides
Shewana3_0351: Shewana3_0351 - hypothetical protein (RefSeq), at 386,284 to 386,697
_0351
Shewana3_0352: Shewana3_0352 - amino acid ABC transporter periplasmic protein (RefSeq), at 386,660 to 387,499
_0352
Shewana3_0353: Shewana3_0353 - hypothetical protein (RefSeq), at 387,672 to 388,988
_0353
Shewana3_0354: Shewana3_0354 - DNA-binding transcriptional regulator IlvY (RefSeq), at 389,048 to 389,920
_0354
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1 at 386.759 kb on - strand, within Shewana3_0352 at 386.830 kb on + strand, within Shewana3_0352 at 386.887 kb on + strand, within Shewana3_0352 at 386.895 kb on - strand, within Shewana3_0352 at 386.895 kb on - strand, within Shewana3_0352 at 386.895 kb on - strand, within Shewana3_0352 at 387.045 kb on + strand, within Shewana3_0352 at 387.169 kb on - strand, within Shewana3_0352 at 387.242 kb on + strand, within Shewana3_0352 at 387.260 kb on - strand, within Shewana3_0352 at 387.286 kb on + strand, within Shewana3_0352 at 387.286 kb on + strand, within Shewana3_0352 at 387.286 kb on + strand, within Shewana3_0352 at 387.286 kb on + strand, within Shewana3_0352 at 387.294 kb on - strand, within Shewana3_0352 at 387.294 kb on - strand, within Shewana3_0352 at 387.408 kb on - strand, within Shewana3_0352 at 387.427 kb on - strand at 387.467 kb on - strand at 387.472 kb on - strand at 387.803 kb on - strand at 387.958 kb on + strand, within Shewana3_0353 at 387.958 kb on + strand, within Shewana3_0353 at 387.958 kb on + strand, within Shewana3_0353 at 387.966 kb on - strand, within Shewana3_0353 at 387.966 kb on - strand, within Shewana3_0353 at 387.966 kb on - strand, within Shewana3_0353 at 388.177 kb on + strand, within Shewana3_0353 at 388.177 kb on + strand, within Shewana3_0353 at 388.177 kb on + strand, within Shewana3_0353 at 388.246 kb on - strand, within Shewana3_0353 at 388.457 kb on - strand, within Shewana3_0353 at 388.457 kb on - strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.552 kb on + strand, within Shewana3_0353 at 388.560 kb on - strand, within Shewana3_0353 at 388.560 kb on - strand, within Shewana3_0353 at 388.560 kb on - strand, within Shewana3_0353 at 388.835 kb on - strand, within Shewana3_0353 at 388.985 kb on - strand at 389.099 kb on - strand at 389.199 kb on - strand, within Shewana3_0354 at 389.217 kb on - strand, within Shewana3_0354 at 389.288 kb on - strand, within Shewana3_0354 at 389.399 kb on + strand, within Shewana3_0354 at 389.407 kb on - strand, within Shewana3_0354 at 389.433 kb on + strand, within Shewana3_0354 at 389.689 kb on - strand, within Shewana3_0354 at 389.716 kb on - strand, within Shewana3_0354 at 389.747 kb on + strand, within Shewana3_0354 at 389.755 kb on - strand, within Shewana3_0354 at 389.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 300 mM remove 386,759 - Shewana3_0352 0.12 -0.4 386,830 + Shewana3_0352 0.20 +0.9 386,887 + Shewana3_0352 0.27 +0.1 386,895 - Shewana3_0352 0.28 +0.2 386,895 - Shewana3_0352 0.28 +0.3 386,895 - Shewana3_0352 0.28 -0.4 387,045 + Shewana3_0352 0.46 -0.5 387,169 - Shewana3_0352 0.61 -1.3 387,242 + Shewana3_0352 0.69 -0.1 387,260 - Shewana3_0352 0.71 -0.2 387,286 + Shewana3_0352 0.75 -1.2 387,286 + Shewana3_0352 0.75 -0.0 387,286 + Shewana3_0352 0.75 +0.1 387,286 + Shewana3_0352 0.75 -0.8 387,294 - Shewana3_0352 0.75 -0.4 387,294 - Shewana3_0352 0.75 +0.3 387,408 - Shewana3_0352 0.89 -0.5 387,427 - -1.0 387,467 - -0.5 387,472 - -0.4 387,803 - -1.4 387,958 + Shewana3_0353 0.22 -0.7 387,958 + Shewana3_0353 0.22 -1.3 387,958 + Shewana3_0353 0.22 -0.4 387,966 - Shewana3_0353 0.22 -0.9 387,966 - Shewana3_0353 0.22 -1.3 387,966 - Shewana3_0353 0.22 -0.4 388,177 + Shewana3_0353 0.38 -0.1 388,177 + Shewana3_0353 0.38 -0.7 388,177 + Shewana3_0353 0.38 -0.2 388,246 - Shewana3_0353 0.44 -2.5 388,457 - Shewana3_0353 0.60 +1.6 388,457 - Shewana3_0353 0.60 -0.4 388,552 + Shewana3_0353 0.67 -0.7 388,552 + Shewana3_0353 0.67 -1.4 388,552 + Shewana3_0353 0.67 -1.5 388,552 + Shewana3_0353 0.67 -1.7 388,552 + Shewana3_0353 0.67 -1.6 388,560 - Shewana3_0353 0.67 -0.1 388,560 - Shewana3_0353 0.67 -0.8 388,560 - Shewana3_0353 0.67 -0.6 388,835 - Shewana3_0353 0.88 -0.6 388,985 - -0.3 389,099 - -0.0 389,199 - Shewana3_0354 0.17 -0.5 389,217 - Shewana3_0354 0.19 -0.1 389,288 - Shewana3_0354 0.27 -0.6 389,399 + Shewana3_0354 0.40 +0.9 389,407 - Shewana3_0354 0.41 +0.0 389,433 + Shewana3_0354 0.44 +0.0 389,689 - Shewana3_0354 0.73 -0.2 389,716 - Shewana3_0354 0.77 -0.1 389,747 + Shewana3_0354 0.80 -0.4 389,755 - Shewana3_0354 0.81 +0.3 389,878 - +0.2
Or see this region's nucleotide sequence