Experiment: nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0346 and Shewana3_0347 are separated by 384 nucleotides Shewana3_0347 and Shewana3_0348 are separated by 178 nucleotides
Shewana3_0346: Shewana3_0346 - hypothetical protein (RefSeq), at 378,580 to 379,314
_0346
Shewana3_0347: Shewana3_0347 - hypothetical protein (RefSeq), at 379,699 to 380,595
_0347
Shewana3_0348: Shewana3_0348 - ATP-dependent DNA helicase RecG (RefSeq), at 380,774 to 382,864
_0348
Position (kb) 379
380
381 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 378.728 kb on - strand, within Shewana3_0346 at 378.774 kb on - strand, within Shewana3_0346 at 379.038 kb on + strand, within Shewana3_0346 at 379.046 kb on - strand, within Shewana3_0346 at 379.090 kb on + strand, within Shewana3_0346 at 379.169 kb on - strand, within Shewana3_0346 at 379.190 kb on - strand, within Shewana3_0346 at 379.190 kb on - strand, within Shewana3_0346 at 379.332 kb on + strand at 379.340 kb on - strand at 379.418 kb on - strand at 379.467 kb on + strand at 379.583 kb on + strand at 379.619 kb on + strand at 379.792 kb on + strand, within Shewana3_0347 at 379.800 kb on - strand, within Shewana3_0347 at 379.806 kb on - strand, within Shewana3_0347 at 379.848 kb on + strand, within Shewana3_0347 at 379.854 kb on - strand, within Shewana3_0347 at 379.856 kb on - strand, within Shewana3_0347 at 379.875 kb on - strand, within Shewana3_0347 at 379.935 kb on - strand, within Shewana3_0347 at 379.936 kb on - strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.986 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 380.135 kb on + strand, within Shewana3_0347 at 380.255 kb on - strand, within Shewana3_0347 at 380.271 kb on + strand, within Shewana3_0347 at 380.351 kb on - strand, within Shewana3_0347 at 380.419 kb on - strand, within Shewana3_0347 at 380.637 kb on - strand at 380.670 kb on - strand at 380.701 kb on - strand at 380.712 kb on + strand at 380.767 kb on - strand at 380.938 kb on + strand at 380.945 kb on + strand at 381.030 kb on - strand, within Shewana3_0348 at 381.083 kb on - strand, within Shewana3_0348 at 381.108 kb on - strand, within Shewana3_0348 at 381.210 kb on - strand, within Shewana3_0348 at 381.234 kb on + strand, within Shewana3_0348
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 300 mM remove 378,728 - Shewana3_0346 0.20 +0.0 378,774 - Shewana3_0346 0.26 +0.2 379,038 + Shewana3_0346 0.62 -0.0 379,046 - Shewana3_0346 0.63 -0.0 379,090 + Shewana3_0346 0.69 -0.7 379,169 - Shewana3_0346 0.80 +0.4 379,190 - Shewana3_0346 0.83 -0.1 379,190 - Shewana3_0346 0.83 -0.1 379,332 + -0.1 379,340 - +0.1 379,418 - -0.9 379,467 + -0.1 379,583 + -0.8 379,619 + -0.3 379,792 + Shewana3_0347 0.10 -0.1 379,800 - Shewana3_0347 0.11 +0.2 379,806 - Shewana3_0347 0.12 +0.0 379,848 + Shewana3_0347 0.17 +0.3 379,854 - Shewana3_0347 0.17 +0.4 379,856 - Shewana3_0347 0.18 +0.7 379,875 - Shewana3_0347 0.20 +0.1 379,935 - Shewana3_0347 0.26 +0.0 379,936 - Shewana3_0347 0.26 +0.3 379,974 + Shewana3_0347 0.31 +0.3 379,974 + Shewana3_0347 0.31 +0.6 379,982 - Shewana3_0347 0.32 -0.1 379,982 - Shewana3_0347 0.32 +0.5 379,982 - Shewana3_0347 0.32 +0.3 379,982 - Shewana3_0347 0.32 +0.1 379,982 - Shewana3_0347 0.32 +0.0 379,982 - Shewana3_0347 0.32 -0.1 379,986 + Shewana3_0347 0.32 -0.4 379,993 + Shewana3_0347 0.33 -0.2 379,993 + Shewana3_0347 0.33 -0.0 379,994 - Shewana3_0347 0.33 +0.3 379,994 - Shewana3_0347 0.33 +0.2 380,135 + Shewana3_0347 0.49 +0.1 380,255 - Shewana3_0347 0.62 +0.9 380,271 + Shewana3_0347 0.64 +0.3 380,351 - Shewana3_0347 0.73 -0.6 380,419 - Shewana3_0347 0.80 +0.2 380,637 - +0.0 380,670 - +0.0 380,701 - +0.0 380,712 + +0.9 380,767 - -0.3 380,938 + -1.2 380,945 + -2.2 381,030 - Shewana3_0348 0.12 -0.7 381,083 - Shewana3_0348 0.15 -2.6 381,108 - Shewana3_0348 0.16 -4.0 381,210 - Shewana3_0348 0.21 -3.5 381,234 + Shewana3_0348 0.22 -2.9
Or see this region's nucleotide sequence