Experiment: nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0344 and Shewana3_0345 overlap by 14 nucleotides Shewana3_0345 and Shewana3_0346 overlap by 8 nucleotides Shewana3_0346 and Shewana3_0347 are separated by 384 nucleotides
Shewana3_0344: Shewana3_0344 - acyl carrier protein, putative (RefSeq), at 377,498 to 377,752
_0344
Shewana3_0345: Shewana3_0345 - phospholipid/glycerol acyltransferase (RefSeq), at 377,739 to 378,587
_0345
Shewana3_0346: Shewana3_0346 - hypothetical protein (RefSeq), at 378,580 to 379,314
_0346
Shewana3_0347: Shewana3_0347 - hypothetical protein (RefSeq), at 379,699 to 380,595
_0347
Position (kb) 378
379
380 Strain fitness (log2 ratio) -1
0
1 at 377.635 kb on + strand, within Shewana3_0344 at 377.683 kb on + strand, within Shewana3_0344 at 378.078 kb on + strand, within Shewana3_0345 at 378.086 kb on - strand, within Shewana3_0345 at 378.113 kb on - strand, within Shewana3_0345 at 378.193 kb on - strand, within Shewana3_0345 at 378.295 kb on + strand, within Shewana3_0345 at 378.350 kb on - strand, within Shewana3_0345 at 378.390 kb on - strand, within Shewana3_0345 at 378.410 kb on + strand, within Shewana3_0345 at 378.539 kb on + strand at 378.547 kb on - strand at 378.567 kb on + strand at 378.624 kb on + strand at 378.675 kb on - strand, within Shewana3_0346 at 378.698 kb on + strand, within Shewana3_0346 at 378.728 kb on - strand, within Shewana3_0346 at 378.774 kb on - strand, within Shewana3_0346 at 379.038 kb on + strand, within Shewana3_0346 at 379.046 kb on - strand, within Shewana3_0346 at 379.090 kb on + strand, within Shewana3_0346 at 379.169 kb on - strand, within Shewana3_0346 at 379.190 kb on - strand, within Shewana3_0346 at 379.190 kb on - strand, within Shewana3_0346 at 379.332 kb on + strand at 379.340 kb on - strand at 379.418 kb on - strand at 379.467 kb on + strand at 379.583 kb on + strand at 379.619 kb on + strand at 379.792 kb on + strand, within Shewana3_0347 at 379.800 kb on - strand, within Shewana3_0347 at 379.806 kb on - strand, within Shewana3_0347 at 379.848 kb on + strand, within Shewana3_0347 at 379.854 kb on - strand, within Shewana3_0347 at 379.856 kb on - strand, within Shewana3_0347 at 379.875 kb on - strand, within Shewana3_0347 at 379.935 kb on - strand, within Shewana3_0347 at 379.936 kb on - strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.986 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 380.135 kb on + strand, within Shewana3_0347 at 380.255 kb on - strand, within Shewana3_0347 at 380.271 kb on + strand, within Shewana3_0347
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 300 mM remove 377,635 + Shewana3_0344 0.54 -1.2 377,683 + Shewana3_0344 0.73 -0.5 378,078 + Shewana3_0345 0.40 -0.4 378,086 - Shewana3_0345 0.41 -0.4 378,113 - Shewana3_0345 0.44 -0.1 378,193 - Shewana3_0345 0.53 -0.8 378,295 + Shewana3_0345 0.65 +0.2 378,350 - Shewana3_0345 0.72 +0.1 378,390 - Shewana3_0345 0.77 -0.4 378,410 + Shewana3_0345 0.79 +0.1 378,539 + +1.1 378,547 - -0.5 378,567 + -0.6 378,624 + -0.2 378,675 - Shewana3_0346 0.13 +0.1 378,698 + Shewana3_0346 0.16 -0.1 378,728 - Shewana3_0346 0.20 +0.0 378,774 - Shewana3_0346 0.26 +0.2 379,038 + Shewana3_0346 0.62 -0.0 379,046 - Shewana3_0346 0.63 -0.0 379,090 + Shewana3_0346 0.69 -0.7 379,169 - Shewana3_0346 0.80 +0.4 379,190 - Shewana3_0346 0.83 -0.1 379,190 - Shewana3_0346 0.83 -0.1 379,332 + -0.1 379,340 - +0.1 379,418 - -0.9 379,467 + -0.1 379,583 + -0.8 379,619 + -0.3 379,792 + Shewana3_0347 0.10 -0.1 379,800 - Shewana3_0347 0.11 +0.2 379,806 - Shewana3_0347 0.12 +0.0 379,848 + Shewana3_0347 0.17 +0.3 379,854 - Shewana3_0347 0.17 +0.4 379,856 - Shewana3_0347 0.18 +0.7 379,875 - Shewana3_0347 0.20 +0.1 379,935 - Shewana3_0347 0.26 +0.0 379,936 - Shewana3_0347 0.26 +0.3 379,974 + Shewana3_0347 0.31 +0.3 379,974 + Shewana3_0347 0.31 +0.6 379,982 - Shewana3_0347 0.32 -0.1 379,982 - Shewana3_0347 0.32 +0.5 379,982 - Shewana3_0347 0.32 +0.3 379,982 - Shewana3_0347 0.32 +0.1 379,982 - Shewana3_0347 0.32 +0.0 379,982 - Shewana3_0347 0.32 -0.1 379,986 + Shewana3_0347 0.32 -0.4 379,993 + Shewana3_0347 0.33 -0.2 379,993 + Shewana3_0347 0.33 -0.0 379,994 - Shewana3_0347 0.33 +0.3 379,994 - Shewana3_0347 0.33 +0.2 380,135 + Shewana3_0347 0.49 +0.1 380,255 - Shewana3_0347 0.62 +0.9 380,271 + Shewana3_0347 0.64 +0.3
Or see this region's nucleotide sequence