Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2321 and Shew_2322 are separated by 344 nucleotides Shew_2322 and Shew_2323 are separated by 108 nucleotides Shew_2323 and Shew_2324 are separated by 316 nucleotides
Shew_2321: Shew_2321 - inositol monophosphatase (RefSeq), at 2,716,213 to 2,717,016
_2321
Shew_2322: Shew_2322 - NnrS family protein (RefSeq), at 2,717,361 to 2,718,533
_2322
Shew_2323: Shew_2323 - phosphate-starvation-inducible E (RefSeq), at 2,718,642 to 2,719,046
_2323
Shew_2324: Shew_2324 - type IV pilus assembly PilZ (RefSeq), at 2,719,363 to 2,719,665
_2324
Position (kb)
2717
2718
2719 Strain fitness (log2 ratio)
-1
0
1 at 2717.445 kb on + strand at 2717.448 kb on + strand at 2717.621 kb on - strand, within Shew_2322 at 2718.206 kb on - strand, within Shew_2322 at 2718.321 kb on + strand, within Shew_2322 at 2718.411 kb on - strand, within Shew_2322 at 2718.763 kb on - strand, within Shew_2323 at 2718.786 kb on + strand, within Shew_2323 at 2719.183 kb on - strand at 2719.464 kb on + strand, within Shew_2324
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 2,717,445 + +0.1 2,717,448 + +0.1 2,717,621 - Shew_2322 0.22 -0.1 2,718,206 - Shew_2322 0.72 -0.0 2,718,321 + Shew_2322 0.82 +0.2 2,718,411 - Shew_2322 0.90 +0.1 2,718,763 - Shew_2323 0.30 +0.2 2,718,786 + Shew_2323 0.36 +0.1 2,719,183 - -0.4 2,719,464 + Shew_2324 0.33 +0.9
Or see this region's nucleotide sequence