Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0728 and Shew_0729 are separated by 248 nucleotides Shew_0729 and Shew_0730 are separated by 88 nucleotides Shew_0730 and Shew_0731 are separated by 8 nucleotides
Shew_0728: Shew_0728 - dihydroorotase (RefSeq), at 829,023 to 830,051
_0728
Shew_0729: Shew_0729 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 830,300 to 832,000
_0729
Shew_0730: Shew_0730 - protein of unknown function DUF395, YeeE/YedE (RefSeq), at 832,089 to 832,517
_0730
Shew_0731: Shew_0731 - protein of unknown function DUF395, YeeE/YedE (RefSeq), at 832,526 to 832,996
_0731
Position (kb) 830
831
832
833 Strain fitness (log2 ratio) -1
0
1
2 at 829.397 kb on - strand, within Shew_0728 at 829.426 kb on - strand, within Shew_0728 at 829.457 kb on - strand, within Shew_0728 at 829.635 kb on - strand, within Shew_0728 at 829.761 kb on - strand, within Shew_0728 at 829.880 kb on + strand, within Shew_0728 at 830.038 kb on - strand at 830.480 kb on - strand, within Shew_0729 at 830.480 kb on - strand, within Shew_0729 at 830.966 kb on - strand, within Shew_0729 at 831.494 kb on - strand, within Shew_0729 at 831.644 kb on + strand, within Shew_0729 at 831.652 kb on - strand, within Shew_0729 at 832.113 kb on - strand at 832.123 kb on - strand at 832.467 kb on + strand, within Shew_0730 at 832.636 kb on + strand, within Shew_0731 at 832.724 kb on - strand, within Shew_0731 at 832.825 kb on - strand, within Shew_0731
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 829,397 - Shew_0728 0.36 +1.5 829,426 - Shew_0728 0.39 +1.8 829,457 - Shew_0728 0.42 +1.9 829,635 - Shew_0728 0.59 +1.5 829,761 - Shew_0728 0.72 +1.1 829,880 + Shew_0728 0.83 +1.6 830,038 - +0.6 830,480 - Shew_0729 0.11 +0.1 830,480 - Shew_0729 0.11 +1.0 830,966 - Shew_0729 0.39 +0.9 831,494 - Shew_0729 0.70 +0.4 831,644 + Shew_0729 0.79 +0.6 831,652 - Shew_0729 0.79 -0.4 832,113 - +0.1 832,123 - -0.6 832,467 + Shew_0730 0.88 +0.4 832,636 + Shew_0731 0.23 -1.2 832,724 - Shew_0731 0.42 +0.6 832,825 - Shew_0731 0.63 +0.4
Or see this region's nucleotide sequence