Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_826 and Pf6N2E2_827 are separated by 541 nucleotides Pf6N2E2_827 and Pf6N2E2_828 are separated by 127 nucleotides Pf6N2E2_828 and Pf6N2E2_829 are separated by 201 nucleotides
Pf6N2E2_826 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 964,711 to 965,301
_826
Pf6N2E2_827 - probable dioxygenase, at 965,843 to 966,268
_827
Pf6N2E2_828 - Transcriptional regulator, TetR family, at 966,396 to 967,016
_828
Pf6N2E2_829 - TesB-like acyl-CoA thioesterase 1, at 967,218 to 967,997
_829
Position (kb) 965
966
967 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 964.982 kb on + strand, within Pf6N2E2_826 at 964.982 kb on + strand, within Pf6N2E2_826 at 964.983 kb on - strand, within Pf6N2E2_826 at 964.983 kb on - strand, within Pf6N2E2_826 at 964.983 kb on - strand, within Pf6N2E2_826 at 965.020 kb on - strand, within Pf6N2E2_826 at 965.061 kb on - strand, within Pf6N2E2_826 at 965.242 kb on + strand, within Pf6N2E2_826 at 965.242 kb on + strand, within Pf6N2E2_826 at 965.242 kb on + strand, within Pf6N2E2_826 at 965.242 kb on + strand, within Pf6N2E2_826 at 965.242 kb on + strand, within Pf6N2E2_826 at 965.243 kb on - strand at 965.243 kb on - strand at 965.243 kb on - strand at 965.243 kb on - strand at 965.243 kb on - strand at 965.255 kb on - strand at 965.255 kb on - strand at 965.463 kb on + strand at 965.542 kb on + strand at 965.542 kb on + strand at 965.543 kb on - strand at 965.543 kb on - strand at 965.543 kb on - strand at 965.543 kb on - strand at 965.660 kb on + strand at 965.660 kb on + strand at 965.660 kb on + strand at 965.660 kb on + strand at 965.661 kb on - strand at 965.661 kb on - strand at 965.662 kb on + strand at 965.662 kb on + strand at 965.663 kb on - strand at 965.663 kb on - strand at 965.663 kb on - strand at 965.663 kb on - strand at 965.701 kb on + strand at 965.701 kb on + strand at 965.701 kb on + strand at 965.702 kb on - strand at 965.830 kb on - strand at 965.879 kb on + strand at 965.907 kb on - strand, within Pf6N2E2_827 at 965.907 kb on - strand, within Pf6N2E2_827 at 965.970 kb on - strand, within Pf6N2E2_827 at 966.152 kb on + strand, within Pf6N2E2_827 at 966.384 kb on + strand at 966.384 kb on + strand at 966.496 kb on - strand, within Pf6N2E2_828 at 966.555 kb on + strand, within Pf6N2E2_828 at 966.555 kb on + strand, within Pf6N2E2_828 at 966.556 kb on - strand, within Pf6N2E2_828 at 966.556 kb on - strand, within Pf6N2E2_828 at 966.556 kb on - strand, within Pf6N2E2_828 at 966.561 kb on + strand, within Pf6N2E2_828 at 966.562 kb on - strand, within Pf6N2E2_828 at 966.747 kb on + strand, within Pf6N2E2_828 at 966.747 kb on + strand, within Pf6N2E2_828 at 966.799 kb on - strand, within Pf6N2E2_828 at 966.934 kb on + strand, within Pf6N2E2_828 at 966.945 kb on + strand, within Pf6N2E2_828 at 966.945 kb on + strand, within Pf6N2E2_828 at 967.077 kb on - strand at 967.142 kb on + strand at 967.215 kb on + strand at 967.216 kb on - strand at 967.216 kb on - strand at 967.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 964,982 + Pf6N2E2_826 0.46 +0.9 964,982 + Pf6N2E2_826 0.46 +0.8 964,983 - Pf6N2E2_826 0.46 +1.5 964,983 - Pf6N2E2_826 0.46 -0.9 964,983 - Pf6N2E2_826 0.46 +0.5 965,020 - Pf6N2E2_826 0.52 +0.7 965,061 - Pf6N2E2_826 0.59 -0.3 965,242 + Pf6N2E2_826 0.90 -0.5 965,242 + Pf6N2E2_826 0.90 -1.0 965,242 + Pf6N2E2_826 0.90 -0.9 965,242 + Pf6N2E2_826 0.90 +0.2 965,242 + Pf6N2E2_826 0.90 -1.5 965,243 - -0.0 965,243 - +2.2 965,243 - +1.1 965,243 - +1.3 965,243 - +0.5 965,255 - -1.0 965,255 - +1.0 965,463 + -0.5 965,542 + +1.5 965,542 + +1.7 965,543 - +0.1 965,543 - +1.1 965,543 - +0.1 965,543 - -0.4 965,660 + +1.0 965,660 + +0.1 965,660 + +2.8 965,660 + -2.2 965,661 - +1.1 965,661 - +0.4 965,662 + -0.1 965,662 + +0.1 965,663 - +0.5 965,663 - -0.0 965,663 - +0.8 965,663 - -1.2 965,701 + -0.0 965,701 + -0.5 965,701 + -0.1 965,702 - -1.5 965,830 - +0.1 965,879 + -0.1 965,907 - Pf6N2E2_827 0.15 -0.6 965,907 - Pf6N2E2_827 0.15 -2.5 965,970 - Pf6N2E2_827 0.30 -0.5 966,152 + Pf6N2E2_827 0.73 +0.0 966,384 + -2.4 966,384 + -0.1 966,496 - Pf6N2E2_828 0.16 +0.8 966,555 + Pf6N2E2_828 0.26 -0.5 966,555 + Pf6N2E2_828 0.26 +0.6 966,556 - Pf6N2E2_828 0.26 -0.3 966,556 - Pf6N2E2_828 0.26 +0.3 966,556 - Pf6N2E2_828 0.26 +0.5 966,561 + Pf6N2E2_828 0.27 +0.9 966,562 - Pf6N2E2_828 0.27 +1.5 966,747 + Pf6N2E2_828 0.57 +0.8 966,747 + Pf6N2E2_828 0.57 -0.5 966,799 - Pf6N2E2_828 0.65 +1.6 966,934 + Pf6N2E2_828 0.87 +1.1 966,945 + Pf6N2E2_828 0.88 +1.6 966,945 + Pf6N2E2_828 0.88 -0.2 967,077 - +0.6 967,142 + +1.6 967,215 + +2.0 967,216 - +1.1 967,216 - +0.4 967,216 - -0.5
Or see this region's nucleotide sequence