Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_820

Experiment: A22 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_818 and Pf6N2E2_819 overlap by 8 nucleotidesPf6N2E2_819 and Pf6N2E2_820 are separated by 267 nucleotidesPf6N2E2_820 and Pf6N2E2_821 overlap by 4 nucleotides Pf6N2E2_818 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 951,775 to 953,055 _818 Pf6N2E2_819 - Response regulator, at 953,048 to 953,425 _819 Pf6N2E2_820 - Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-), at 953,693 to 955,363 _820 Pf6N2E2_821 - KaiC, at 955,360 to 956,862 _821 Position (kb) 953 954 955 956Strain fitness (log2 ratio) -2 -1 0 1 2at 952.720 kb on + strand, within Pf6N2E2_818at 952.743 kb on + strand, within Pf6N2E2_818at 952.794 kb on + strand, within Pf6N2E2_818at 952.794 kb on + strand, within Pf6N2E2_818at 952.794 kb on + strand, within Pf6N2E2_818at 953.015 kb on + strandat 953.016 kb on - strandat 953.025 kb on + strandat 953.025 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.074 kb on - strandat 953.120 kb on + strand, within Pf6N2E2_819at 953.148 kb on + strand, within Pf6N2E2_819at 953.148 kb on + strand, within Pf6N2E2_819at 953.149 kb on - strand, within Pf6N2E2_819at 953.312 kb on + strand, within Pf6N2E2_819at 953.423 kb on + strandat 953.485 kb on - strandat 953.519 kb on + strandat 953.520 kb on - strandat 953.633 kb on - strandat 953.633 kb on - strandat 953.809 kb on - strandat 954.101 kb on + strand, within Pf6N2E2_820at 954.101 kb on + strand, within Pf6N2E2_820at 954.102 kb on - strand, within Pf6N2E2_820at 954.204 kb on + strand, within Pf6N2E2_820at 954.205 kb on - strand, within Pf6N2E2_820at 954.330 kb on + strand, within Pf6N2E2_820at 954.330 kb on + strand, within Pf6N2E2_820at 954.331 kb on - strand, within Pf6N2E2_820at 954.331 kb on - strand, within Pf6N2E2_820at 954.331 kb on - strand, within Pf6N2E2_820at 954.354 kb on + strand, within Pf6N2E2_820at 954.847 kb on + strand, within Pf6N2E2_820at 954.958 kb on - strand, within Pf6N2E2_820at 955.401 kb on + strandat 955.401 kb on + strandat 955.401 kb on + strandat 955.402 kb on - strandat 955.402 kb on - strandat 955.403 kb on + strandat 955.403 kb on + strandat 955.403 kb on + strandat 955.403 kb on + strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.482 kb on - strandat 955.595 kb on + strand, within Pf6N2E2_821at 955.595 kb on + strand, within Pf6N2E2_821at 955.595 kb on + strand, within Pf6N2E2_821at 955.595 kb on + strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.599 kb on + strand, within Pf6N2E2_821at 955.599 kb on + strand, within Pf6N2E2_821at 955.599 kb on + strand, within Pf6N2E2_821at 955.600 kb on - strand, within Pf6N2E2_821at 955.600 kb on - strand, within Pf6N2E2_821at 955.682 kb on + strand, within Pf6N2E2_821at 955.683 kb on - strand, within Pf6N2E2_821at 955.742 kb on + strand, within Pf6N2E2_821at 955.973 kb on - strand, within Pf6N2E2_821at 955.973 kb on - strand, within Pf6N2E2_821at 956.117 kb on + strand, within Pf6N2E2_821at 956.117 kb on + strand, within Pf6N2E2_821at 956.118 kb on - strand, within Pf6N2E2_821at 956.161 kb on + strand, within Pf6N2E2_821at 956.204 kb on + strand, within Pf6N2E2_821at 956.219 kb on + strand, within Pf6N2E2_821at 956.255 kb on + strand, within Pf6N2E2_821at 956.256 kb on - strand, within Pf6N2E2_821at 956.256 kb on - strand, within Pf6N2E2_821at 956.256 kb on - strand, within Pf6N2E2_821

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
remove
952,720 + Pf6N2E2_818 0.74 +0.4
952,743 + Pf6N2E2_818 0.76 -0.5
952,794 + Pf6N2E2_818 0.80 +0.8
952,794 + Pf6N2E2_818 0.80 +0.1
952,794 + Pf6N2E2_818 0.80 +0.2
953,015 + +0.2
953,016 - +0.1
953,025 + +0.5
953,025 + +0.6
953,073 + +0.5
953,073 + +0.7
953,073 + -0.7
953,073 + -0.3
953,073 + -0.6
953,074 - -1.5
953,120 + Pf6N2E2_819 0.19 +0.1
953,148 + Pf6N2E2_819 0.26 +1.1
953,148 + Pf6N2E2_819 0.26 +0.9
953,149 - Pf6N2E2_819 0.27 -0.5
953,312 + Pf6N2E2_819 0.70 +0.7
953,423 + +1.0
953,485 - -2.1
953,519 + +0.5
953,520 - +1.1
953,633 - -1.2
953,633 - -0.1
953,809 - +0.2
954,101 + Pf6N2E2_820 0.24 +0.3
954,101 + Pf6N2E2_820 0.24 +0.8
954,102 - Pf6N2E2_820 0.24 -1.5
954,204 + Pf6N2E2_820 0.31 -0.8
954,205 - Pf6N2E2_820 0.31 -0.4
954,330 + Pf6N2E2_820 0.38 -0.5
954,330 + Pf6N2E2_820 0.38 +0.7
954,331 - Pf6N2E2_820 0.38 -0.8
954,331 - Pf6N2E2_820 0.38 +0.3
954,331 - Pf6N2E2_820 0.38 -0.5
954,354 + Pf6N2E2_820 0.40 +0.2
954,847 + Pf6N2E2_820 0.69 -0.9
954,958 - Pf6N2E2_820 0.76 -0.9
955,401 + +1.8
955,401 + +1.2
955,401 + +1.9
955,402 - +2.2
955,402 - +0.2
955,403 + +0.2
955,403 + -0.3
955,403 + -0.5
955,403 + +1.5
955,404 - +0.6
955,404 - +0.5
955,404 - +0.9
955,404 - -0.4
955,404 - -1.0
955,404 - -0.7
955,404 - +1.0
955,404 - +0.3
955,404 - +1.7
955,404 - +0.2
955,404 - +0.5
955,404 - -0.9
955,404 - +0.1
955,482 - +0.5
955,595 + Pf6N2E2_821 0.16 +0.1
955,595 + Pf6N2E2_821 0.16 +1.0
955,595 + Pf6N2E2_821 0.16 +0.3
955,595 + Pf6N2E2_821 0.16 -0.1
955,596 - Pf6N2E2_821 0.16 -0.7
955,596 - Pf6N2E2_821 0.16 -0.4
955,596 - Pf6N2E2_821 0.16 +0.4
955,596 - Pf6N2E2_821 0.16 -0.2
955,596 - Pf6N2E2_821 0.16 -1.0
955,596 - Pf6N2E2_821 0.16 +1.4
955,596 - Pf6N2E2_821 0.16 +0.1
955,596 - Pf6N2E2_821 0.16 +0.3
955,596 - Pf6N2E2_821 0.16 +1.6
955,599 + Pf6N2E2_821 0.16 +0.4
955,599 + Pf6N2E2_821 0.16 +1.3
955,599 + Pf6N2E2_821 0.16 -0.5
955,600 - Pf6N2E2_821 0.16 -0.3
955,600 - Pf6N2E2_821 0.16 +0.4
955,682 + Pf6N2E2_821 0.21 -0.6
955,683 - Pf6N2E2_821 0.21 -0.9
955,742 + Pf6N2E2_821 0.25 -0.0
955,973 - Pf6N2E2_821 0.41 +0.3
955,973 - Pf6N2E2_821 0.41 -0.1
956,117 + Pf6N2E2_821 0.50 +0.1
956,117 + Pf6N2E2_821 0.50 +0.2
956,118 - Pf6N2E2_821 0.50 +0.9
956,161 + Pf6N2E2_821 0.53 +1.2
956,204 + Pf6N2E2_821 0.56 +1.1
956,219 + Pf6N2E2_821 0.57 -0.8
956,255 + Pf6N2E2_821 0.60 +0.3
956,256 - Pf6N2E2_821 0.60 -0.3
956,256 - Pf6N2E2_821 0.60 +0.3
956,256 - Pf6N2E2_821 0.60 +0.3

Or see this region's nucleotide sequence