Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_730

Experiment: A22 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_729 and Pf6N2E2_730 are separated by 1 nucleotidesPf6N2E2_730 and Pf6N2E2_731 are separated by 2 nucleotidesPf6N2E2_731 and Pf6N2E2_732 overlap by 8 nucleotides Pf6N2E2_729 - Respiratory nitrate reductase alpha chain (EC 1.7.99.4), at 834,236 to 838,009 _729 Pf6N2E2_730 - Respiratory nitrate reductase beta chain (EC 1.7.99.4), at 838,011 to 839,549 _730 Pf6N2E2_731 - Respiratory nitrate reductase delta chain (EC 1.7.99.4), at 839,552 to 840,307 _731 Pf6N2E2_732 - Respiratory nitrate reductase gamma chain (EC 1.7.99.4), at 840,300 to 840,980 _732 Position (kb) 838 839 840Strain fitness (log2 ratio) -2 -1 0 1 2at 837.315 kb on - strand, within Pf6N2E2_729at 837.315 kb on - strand, within Pf6N2E2_729at 837.383 kb on + strand, within Pf6N2E2_729at 837.384 kb on - strand, within Pf6N2E2_729at 837.551 kb on + strand, within Pf6N2E2_729at 837.551 kb on + strand, within Pf6N2E2_729at 837.551 kb on + strand, within Pf6N2E2_729at 837.552 kb on - strand, within Pf6N2E2_729at 837.552 kb on - strand, within Pf6N2E2_729at 837.552 kb on - strand, within Pf6N2E2_729at 837.552 kb on - strand, within Pf6N2E2_729at 837.734 kb on + strandat 837.734 kb on + strandat 837.734 kb on + strandat 837.734 kb on + strandat 837.734 kb on + strandat 837.734 kb on + strandat 837.734 kb on + strandat 837.735 kb on - strandat 837.735 kb on - strandat 837.735 kb on - strandat 837.735 kb on - strandat 837.735 kb on - strandat 837.735 kb on - strandat 837.879 kb on - strandat 837.879 kb on - strandat 837.879 kb on - strandat 837.879 kb on - strandat 838.122 kb on + strandat 838.123 kb on - strandat 838.123 kb on - strandat 838.308 kb on + strand, within Pf6N2E2_730at 838.309 kb on - strand, within Pf6N2E2_730at 838.311 kb on + strand, within Pf6N2E2_730at 838.311 kb on + strand, within Pf6N2E2_730at 838.512 kb on + strand, within Pf6N2E2_730at 838.513 kb on - strand, within Pf6N2E2_730at 838.542 kb on + strand, within Pf6N2E2_730at 838.542 kb on + strand, within Pf6N2E2_730at 838.542 kb on + strand, within Pf6N2E2_730at 838.542 kb on + strand, within Pf6N2E2_730at 838.542 kb on + strand, within Pf6N2E2_730at 838.543 kb on - strand, within Pf6N2E2_730at 838.543 kb on - strand, within Pf6N2E2_730at 838.543 kb on - strand, within Pf6N2E2_730at 838.611 kb on + strand, within Pf6N2E2_730at 838.612 kb on - strand, within Pf6N2E2_730at 838.612 kb on - strand, within Pf6N2E2_730at 838.612 kb on - strand, within Pf6N2E2_730at 838.692 kb on + strand, within Pf6N2E2_730at 838.692 kb on + strand, within Pf6N2E2_730at 838.693 kb on - strand, within Pf6N2E2_730at 838.693 kb on - strand, within Pf6N2E2_730at 838.693 kb on - strand, within Pf6N2E2_730at 838.884 kb on + strand, within Pf6N2E2_730at 838.885 kb on - strand, within Pf6N2E2_730at 839.071 kb on - strand, within Pf6N2E2_730at 839.172 kb on + strand, within Pf6N2E2_730at 839.251 kb on - strand, within Pf6N2E2_730at 839.337 kb on + strand, within Pf6N2E2_730at 839.338 kb on - strand, within Pf6N2E2_730at 839.338 kb on - strand, within Pf6N2E2_730at 839.338 kb on - strand, within Pf6N2E2_730at 839.361 kb on + strand, within Pf6N2E2_730at 839.361 kb on + strand, within Pf6N2E2_730at 839.361 kb on + strand, within Pf6N2E2_730at 839.362 kb on - strand, within Pf6N2E2_730at 839.362 kb on - strand, within Pf6N2E2_730at 839.362 kb on - strand, within Pf6N2E2_730at 839.380 kb on + strand, within Pf6N2E2_730at 839.880 kb on + strand, within Pf6N2E2_731at 839.880 kb on + strand, within Pf6N2E2_731at 839.881 kb on - strand, within Pf6N2E2_731at 839.881 kb on - strand, within Pf6N2E2_731at 839.881 kb on - strand, within Pf6N2E2_731at 839.888 kb on + strand, within Pf6N2E2_731at 839.888 kb on + strand, within Pf6N2E2_731at 839.888 kb on + strand, within Pf6N2E2_731at 839.888 kb on + strand, within Pf6N2E2_731at 839.888 kb on + strand, within Pf6N2E2_731at 839.888 kb on + strand, within Pf6N2E2_731at 839.888 kb on + strand, within Pf6N2E2_731at 840.298 kb on + strandat 840.298 kb on + strandat 840.305 kb on + strandat 840.305 kb on + strandat 840.306 kb on - strandat 840.306 kb on - strandat 840.396 kb on + strand, within Pf6N2E2_732at 840.397 kb on - strand, within Pf6N2E2_732at 840.397 kb on - strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.528 kb on + strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732at 840.529 kb on - strand, within Pf6N2E2_732

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
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837,315 - Pf6N2E2_729 0.82 +0.7
837,315 - Pf6N2E2_729 0.82 +0.7
837,383 + Pf6N2E2_729 0.83 -0.5
837,384 - Pf6N2E2_729 0.83 +0.8
837,551 + Pf6N2E2_729 0.88 +0.1
837,551 + Pf6N2E2_729 0.88 +0.6
837,551 + Pf6N2E2_729 0.88 +0.5
837,552 - Pf6N2E2_729 0.88 +0.4
837,552 - Pf6N2E2_729 0.88 -0.1
837,552 - Pf6N2E2_729 0.88 -0.3
837,552 - Pf6N2E2_729 0.88 +0.4
837,734 + +1.0
837,734 + +1.3
837,734 + +0.3
837,734 + +1.1
837,734 + +0.6
837,734 + -0.8
837,734 + -0.5
837,735 - +1.5
837,735 - +1.5
837,735 - +1.8
837,735 - -0.6
837,735 - +0.3
837,735 - +0.5
837,879 - +1.1
837,879 - +0.3
837,879 - +0.1
837,879 - +0.3
838,122 + +1.4
838,123 - -0.5
838,123 - +0.5
838,308 + Pf6N2E2_730 0.19 +1.7
838,309 - Pf6N2E2_730 0.19 +2.1
838,311 + Pf6N2E2_730 0.19 +0.1
838,311 + Pf6N2E2_730 0.19 +0.1
838,512 + Pf6N2E2_730 0.33 +0.2
838,513 - Pf6N2E2_730 0.33 -0.8
838,542 + Pf6N2E2_730 0.35 +0.6
838,542 + Pf6N2E2_730 0.35 +1.1
838,542 + Pf6N2E2_730 0.35 +1.1
838,542 + Pf6N2E2_730 0.35 -0.1
838,542 + Pf6N2E2_730 0.35 +0.5
838,543 - Pf6N2E2_730 0.35 +0.9
838,543 - Pf6N2E2_730 0.35 +1.1
838,543 - Pf6N2E2_730 0.35 -0.5
838,611 + Pf6N2E2_730 0.39 +0.9
838,612 - Pf6N2E2_730 0.39 +0.8
838,612 - Pf6N2E2_730 0.39 +2.3
838,612 - Pf6N2E2_730 0.39 +0.4
838,692 + Pf6N2E2_730 0.44 +0.8
838,692 + Pf6N2E2_730 0.44 -0.8
838,693 - Pf6N2E2_730 0.44 +0.1
838,693 - Pf6N2E2_730 0.44 -0.3
838,693 - Pf6N2E2_730 0.44 +0.7
838,884 + Pf6N2E2_730 0.57 -0.4
838,885 - Pf6N2E2_730 0.57 +1.2
839,071 - Pf6N2E2_730 0.69 +0.2
839,172 + Pf6N2E2_730 0.75 -0.3
839,251 - Pf6N2E2_730 0.81 +0.3
839,337 + Pf6N2E2_730 0.86 +1.6
839,338 - Pf6N2E2_730 0.86 +0.2
839,338 - Pf6N2E2_730 0.86 -0.7
839,338 - Pf6N2E2_730 0.86 +0.4
839,361 + Pf6N2E2_730 0.88 -0.1
839,361 + Pf6N2E2_730 0.88 -0.2
839,361 + Pf6N2E2_730 0.88 -0.0
839,362 - Pf6N2E2_730 0.88 +0.6
839,362 - Pf6N2E2_730 0.88 +0.5
839,362 - Pf6N2E2_730 0.88 +1.4
839,380 + Pf6N2E2_730 0.89 +1.3
839,880 + Pf6N2E2_731 0.43 -2.1
839,880 + Pf6N2E2_731 0.43 +0.7
839,881 - Pf6N2E2_731 0.44 +0.5
839,881 - Pf6N2E2_731 0.44 +0.8
839,881 - Pf6N2E2_731 0.44 -0.8
839,888 + Pf6N2E2_731 0.44 -0.5
839,888 + Pf6N2E2_731 0.44 +0.3
839,888 + Pf6N2E2_731 0.44 +1.6
839,888 + Pf6N2E2_731 0.44 -0.5
839,888 + Pf6N2E2_731 0.44 +0.8
839,888 + Pf6N2E2_731 0.44 -0.2
839,888 + Pf6N2E2_731 0.44 +0.4
840,298 + +0.1
840,298 + +1.0
840,305 + +0.9
840,305 + +0.7
840,306 - +0.3
840,306 - +0.1
840,396 + Pf6N2E2_732 0.14 +0.8
840,397 - Pf6N2E2_732 0.14 +0.5
840,397 - Pf6N2E2_732 0.14 +0.6
840,528 + Pf6N2E2_732 0.33 +1.4
840,528 + Pf6N2E2_732 0.33 -0.6
840,528 + Pf6N2E2_732 0.33 +0.0
840,528 + Pf6N2E2_732 0.33 -1.7
840,528 + Pf6N2E2_732 0.33 +0.4
840,528 + Pf6N2E2_732 0.33 -0.5
840,528 + Pf6N2E2_732 0.33 +1.4
840,528 + Pf6N2E2_732 0.33 +1.5
840,529 - Pf6N2E2_732 0.34 -1.1
840,529 - Pf6N2E2_732 0.34 -1.7
840,529 - Pf6N2E2_732 0.34 +0.3
840,529 - Pf6N2E2_732 0.34 -1.8
840,529 - Pf6N2E2_732 0.34 -0.1
840,529 - Pf6N2E2_732 0.34 +1.0

Or see this region's nucleotide sequence