Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5794

Experiment: A22 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5793 and Pf6N2E2_5794 are separated by 238 nucleotidesPf6N2E2_5794 and Pf6N2E2_5795 are separated by 101 nucleotidesPf6N2E2_5795 and Pf6N2E2_5796 overlap by 1 nucleotides Pf6N2E2_5793 - Aspartyl aminopeptidase, at 6,610,852 to 6,612,141 _5793 Pf6N2E2_5794 - Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70), at 6,612,380 to 6,613,015 _5794 Pf6N2E2_5795 - Cell division topological specificity factor MinE, at 6,613,117 to 6,613,371 _5795 Pf6N2E2_5796 - Septum site-determining protein MinD, at 6,613,371 to 6,614,144 _5796 Position (kb) 6612 6613 6614Strain fitness (log2 ratio) -2 -1 0 1at 6611.418 kb on - strand, within Pf6N2E2_5793at 6611.498 kb on + strand, within Pf6N2E2_5793at 6611.513 kb on + strand, within Pf6N2E2_5793at 6611.521 kb on + strand, within Pf6N2E2_5793at 6611.816 kb on + strand, within Pf6N2E2_5793at 6611.816 kb on + strand, within Pf6N2E2_5793at 6611.984 kb on + strand, within Pf6N2E2_5793at 6611.984 kb on + strand, within Pf6N2E2_5793at 6611.984 kb on + strand, within Pf6N2E2_5793at 6611.985 kb on - strand, within Pf6N2E2_5793at 6611.985 kb on - strand, within Pf6N2E2_5793at 6611.985 kb on - strand, within Pf6N2E2_5793at 6611.987 kb on + strand, within Pf6N2E2_5793at 6612.038 kb on + strandat 6612.038 kb on + strandat 6612.141 kb on + strandat 6612.173 kb on + strandat 6612.211 kb on + strandat 6612.211 kb on + strandat 6612.211 kb on + strandat 6612.211 kb on + strandat 6612.212 kb on - strandat 6612.212 kb on - strandat 6612.212 kb on - strandat 6612.212 kb on - strandat 6612.346 kb on + strandat 6612.346 kb on + strandat 6612.347 kb on - strandat 6612.381 kb on + strandat 6612.381 kb on + strandat 6612.381 kb on + strandat 6612.381 kb on + strandat 6612.381 kb on + strandat 6612.382 kb on - strandat 6612.750 kb on + strand, within Pf6N2E2_5794at 6612.750 kb on + strand, within Pf6N2E2_5794at 6612.750 kb on + strand, within Pf6N2E2_5794

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
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6,611,418 - Pf6N2E2_5793 0.44 -0.1
6,611,498 + Pf6N2E2_5793 0.50 -0.7
6,611,513 + Pf6N2E2_5793 0.51 -0.3
6,611,521 + Pf6N2E2_5793 0.52 -0.5
6,611,816 + Pf6N2E2_5793 0.75 +0.9
6,611,816 + Pf6N2E2_5793 0.75 +0.2
6,611,984 + Pf6N2E2_5793 0.88 +0.6
6,611,984 + Pf6N2E2_5793 0.88 -0.3
6,611,984 + Pf6N2E2_5793 0.88 -0.4
6,611,985 - Pf6N2E2_5793 0.88 -1.9
6,611,985 - Pf6N2E2_5793 0.88 +0.1
6,611,985 - Pf6N2E2_5793 0.88 +0.3
6,611,987 + Pf6N2E2_5793 0.88 +0.3
6,612,038 + +0.4
6,612,038 + -0.7
6,612,141 + -0.2
6,612,173 + +1.1
6,612,211 + +0.6
6,612,211 + +1.0
6,612,211 + -1.1
6,612,211 + +0.6
6,612,212 - +0.7
6,612,212 - -0.2
6,612,212 - +0.4
6,612,212 - +1.0
6,612,346 + +0.0
6,612,346 + +0.1
6,612,347 - +0.3
6,612,381 + -0.7
6,612,381 + -0.1
6,612,381 + +0.1
6,612,381 + +1.0
6,612,381 + +1.1
6,612,382 - -0.8
6,612,750 + Pf6N2E2_5794 0.58 -2.1
6,612,750 + Pf6N2E2_5794 0.58 +0.2
6,612,750 + Pf6N2E2_5794 0.58 -0.4

Or see this region's nucleotide sequence