Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5171

Experiment: A22 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5170 and Pf6N2E2_5171 are separated by 220 nucleotidesPf6N2E2_5171 and Pf6N2E2_5172 are separated by 16 nucleotidesPf6N2E2_5172 and Pf6N2E2_5173 overlap by 1 nucleotides Pf6N2E2_5170 - FIG00955330: hypothetical protein, at 5,957,378 to 5,958,934 _5170 Pf6N2E2_5171 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 5,959,155 to 5,961,371 _5171 Pf6N2E2_5172 - FOG: TPR repeat, at 5,961,388 to 5,962,107 _5172 Pf6N2E2_5173 - Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C), at 5,962,107 to 5,962,436 _5173 Position (kb) 5959 5960 5961 5962Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5958.198 kb on + strand, within Pf6N2E2_5170at 5958.198 kb on + strand, within Pf6N2E2_5170at 5958.198 kb on + strand, within Pf6N2E2_5170at 5958.199 kb on - strand, within Pf6N2E2_5170at 5958.630 kb on + strand, within Pf6N2E2_5170at 5958.630 kb on + strand, within Pf6N2E2_5170at 5958.630 kb on + strand, within Pf6N2E2_5170at 5958.689 kb on + strand, within Pf6N2E2_5170at 5958.689 kb on + strand, within Pf6N2E2_5170at 5958.689 kb on + strand, within Pf6N2E2_5170at 5958.689 kb on + strand, within Pf6N2E2_5170at 5958.690 kb on - strand, within Pf6N2E2_5170at 5958.702 kb on + strand, within Pf6N2E2_5170at 5958.703 kb on - strand, within Pf6N2E2_5170at 5958.703 kb on - strand, within Pf6N2E2_5170at 5958.816 kb on + strandat 5958.816 kb on + strandat 5958.817 kb on - strandat 5958.817 kb on - strandat 5958.823 kb on - strandat 5958.823 kb on - strandat 5958.839 kb on + strandat 5958.948 kb on + strandat 5958.948 kb on + strandat 5958.948 kb on + strandat 5958.949 kb on - strandat 5958.949 kb on - strandat 5958.949 kb on - strandat 5958.975 kb on - strandat 5959.039 kb on + strandat 5959.041 kb on + strandat 5959.041 kb on + strandat 5959.041 kb on + strandat 5959.042 kb on - strandat 5959.130 kb on + strandat 5959.177 kb on - strandat 5959.239 kb on + strandat 5959.240 kb on - strandat 5959.240 kb on - strandat 5959.404 kb on + strand, within Pf6N2E2_5171at 5959.405 kb on - strand, within Pf6N2E2_5171at 5959.405 kb on - strand, within Pf6N2E2_5171at 5959.405 kb on - strand, within Pf6N2E2_5171at 5959.405 kb on - strand, within Pf6N2E2_5171at 5959.455 kb on + strand, within Pf6N2E2_5171at 5959.455 kb on + strand, within Pf6N2E2_5171at 5959.629 kb on + strand, within Pf6N2E2_5171at 5959.629 kb on + strand, within Pf6N2E2_5171at 5959.629 kb on + strand, within Pf6N2E2_5171at 5959.629 kb on + strand, within Pf6N2E2_5171at 5959.629 kb on + strand, within Pf6N2E2_5171at 5959.629 kb on + strand, within Pf6N2E2_5171at 5959.629 kb on + strand, within Pf6N2E2_5171at 5959.629 kb on + strand, within Pf6N2E2_5171at 5959.630 kb on - strand, within Pf6N2E2_5171at 5959.630 kb on - strand, within Pf6N2E2_5171at 5959.682 kb on + strand, within Pf6N2E2_5171at 5959.682 kb on + strand, within Pf6N2E2_5171at 5959.683 kb on - strand, within Pf6N2E2_5171at 5959.683 kb on - strand, within Pf6N2E2_5171at 5959.683 kb on - strand, within Pf6N2E2_5171at 5959.683 kb on - strand, within Pf6N2E2_5171at 5959.683 kb on - strand, within Pf6N2E2_5171at 5959.746 kb on + strand, within Pf6N2E2_5171at 5959.746 kb on + strand, within Pf6N2E2_5171at 5959.747 kb on - strand, within Pf6N2E2_5171at 5959.747 kb on - strand, within Pf6N2E2_5171at 5959.818 kb on + strand, within Pf6N2E2_5171at 5959.845 kb on + strand, within Pf6N2E2_5171at 5959.845 kb on + strand, within Pf6N2E2_5171at 5959.846 kb on - strand, within Pf6N2E2_5171at 5959.858 kb on + strand, within Pf6N2E2_5171at 5959.858 kb on + strand, within Pf6N2E2_5171at 5959.858 kb on + strand, within Pf6N2E2_5171at 5959.858 kb on + strand, within Pf6N2E2_5171at 5959.858 kb on + strand, within Pf6N2E2_5171at 5959.858 kb on + strand, within Pf6N2E2_5171at 5959.859 kb on - strand, within Pf6N2E2_5171at 5959.859 kb on - strand, within Pf6N2E2_5171at 5959.859 kb on - strand, within Pf6N2E2_5171at 5959.859 kb on - strand, within Pf6N2E2_5171at 5959.862 kb on + strand, within Pf6N2E2_5171at 5959.995 kb on + strand, within Pf6N2E2_5171at 5959.995 kb on + strand, within Pf6N2E2_5171at 5959.995 kb on + strand, within Pf6N2E2_5171at 5959.995 kb on + strand, within Pf6N2E2_5171at 5959.995 kb on + strand, within Pf6N2E2_5171at 5959.995 kb on + strand, within Pf6N2E2_5171at 5959.995 kb on + strand, within Pf6N2E2_5171at 5959.995 kb on + strand, within Pf6N2E2_5171at 5959.995 kb on + strand, within Pf6N2E2_5171at 5959.996 kb on - strand, within Pf6N2E2_5171at 5959.996 kb on - strand, within Pf6N2E2_5171at 5959.996 kb on - strand, within Pf6N2E2_5171at 5959.996 kb on - strand, within Pf6N2E2_5171at 5959.996 kb on - strand, within Pf6N2E2_5171at 5959.996 kb on - strand, within Pf6N2E2_5171at 5959.996 kb on - strand, within Pf6N2E2_5171at 5960.469 kb on + strand, within Pf6N2E2_5171at 5960.469 kb on + strand, within Pf6N2E2_5171at 5960.499 kb on + strand, within Pf6N2E2_5171at 5960.499 kb on + strand, within Pf6N2E2_5171at 5960.500 kb on - strand, within Pf6N2E2_5171at 5960.500 kb on - strand, within Pf6N2E2_5171at 5960.577 kb on + strand, within Pf6N2E2_5171at 5960.577 kb on + strand, within Pf6N2E2_5171at 5960.577 kb on + strand, within Pf6N2E2_5171at 5960.577 kb on + strand, within Pf6N2E2_5171at 5960.578 kb on - strand, within Pf6N2E2_5171at 5960.578 kb on - strand, within Pf6N2E2_5171at 5960.578 kb on - strand, within Pf6N2E2_5171at 5960.578 kb on - strand, within Pf6N2E2_5171at 5960.578 kb on - strand, within Pf6N2E2_5171at 5960.578 kb on - strand, within Pf6N2E2_5171at 5960.578 kb on - strand, within Pf6N2E2_5171at 5960.578 kb on - strand, within Pf6N2E2_5171at 5960.578 kb on - strand, within Pf6N2E2_5171at 5960.578 kb on - strand, within Pf6N2E2_5171at 5960.631 kb on + strand, within Pf6N2E2_5171at 5960.631 kb on + strand, within Pf6N2E2_5171at 5960.631 kb on + strand, within Pf6N2E2_5171at 5960.631 kb on + strand, within Pf6N2E2_5171at 5960.631 kb on + strand, within Pf6N2E2_5171at 5960.631 kb on + strand, within Pf6N2E2_5171at 5960.631 kb on + strand, within Pf6N2E2_5171at 5960.631 kb on + strand, within Pf6N2E2_5171at 5960.631 kb on + strand, within Pf6N2E2_5171at 5960.632 kb on - strand, within Pf6N2E2_5171at 5960.632 kb on - strand, within Pf6N2E2_5171at 5960.680 kb on + strand, within Pf6N2E2_5171at 5960.759 kb on - strand, within Pf6N2E2_5171at 5960.784 kb on + strand, within Pf6N2E2_5171at 5960.784 kb on + strand, within Pf6N2E2_5171at 5960.784 kb on + strand, within Pf6N2E2_5171at 5960.784 kb on + strand, within Pf6N2E2_5171at 5960.784 kb on + strand, within Pf6N2E2_5171at 5960.785 kb on - strand, within Pf6N2E2_5171at 5960.813 kb on + strand, within Pf6N2E2_5171at 5960.814 kb on - strand, within Pf6N2E2_5171at 5960.970 kb on + strand, within Pf6N2E2_5171at 5960.970 kb on + strand, within Pf6N2E2_5171at 5960.970 kb on + strand, within Pf6N2E2_5171at 5960.970 kb on + strand, within Pf6N2E2_5171at 5960.970 kb on + strand, within Pf6N2E2_5171at 5960.971 kb on - strand, within Pf6N2E2_5171at 5961.276 kb on + strandat 5961.276 kb on + strandat 5961.276 kb on + strandat 5961.277 kb on - strandat 5961.277 kb on - strandat 5961.278 kb on + strandat 5961.279 kb on - strandat 5961.369 kb on + strandat 5961.369 kb on + strandat 5961.369 kb on + strandat 5961.369 kb on + strandat 5961.369 kb on + strandat 5961.370 kb on - strandat 5961.370 kb on - strandat 5961.444 kb on + strandat 5961.444 kb on + strandat 5961.445 kb on - strandat 5961.449 kb on + strandat 5961.449 kb on + strandat 5961.449 kb on + strandat 5961.715 kb on + strand, within Pf6N2E2_5172at 5961.715 kb on + strand, within Pf6N2E2_5172at 5961.715 kb on + strand, within Pf6N2E2_5172at 5961.716 kb on - strand, within Pf6N2E2_5172at 5961.716 kb on - strand, within Pf6N2E2_5172at 5961.716 kb on - strand, within Pf6N2E2_5172at 5962.293 kb on - strand, within Pf6N2E2_5173at 5962.356 kb on + strand, within Pf6N2E2_5173at 5962.356 kb on + strand, within Pf6N2E2_5173at 5962.357 kb on - strand, within Pf6N2E2_5173at 5962.357 kb on - strand, within Pf6N2E2_5173at 5962.357 kb on - strand, within Pf6N2E2_5173at 5962.357 kb on - strand, within Pf6N2E2_5173

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
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5,958,198 + Pf6N2E2_5170 0.53 +0.8
5,958,198 + Pf6N2E2_5170 0.53 -0.1
5,958,198 + Pf6N2E2_5170 0.53 +0.0
5,958,199 - Pf6N2E2_5170 0.53 -0.7
5,958,630 + Pf6N2E2_5170 0.80 -1.3
5,958,630 + Pf6N2E2_5170 0.80 -1.5
5,958,630 + Pf6N2E2_5170 0.80 +0.1
5,958,689 + Pf6N2E2_5170 0.84 -0.7
5,958,689 + Pf6N2E2_5170 0.84 +0.0
5,958,689 + Pf6N2E2_5170 0.84 -0.5
5,958,689 + Pf6N2E2_5170 0.84 +0.0
5,958,690 - Pf6N2E2_5170 0.84 +1.1
5,958,702 + Pf6N2E2_5170 0.85 +0.6
5,958,703 - Pf6N2E2_5170 0.85 +0.6
5,958,703 - Pf6N2E2_5170 0.85 -1.0
5,958,816 + +2.3
5,958,816 + +0.8
5,958,817 - +0.4
5,958,817 - -0.2
5,958,823 - +1.5
5,958,823 - +0.8
5,958,839 + +0.1
5,958,948 + +0.0
5,958,948 + -0.5
5,958,948 + +0.4
5,958,949 - +0.7
5,958,949 - -2.4
5,958,949 - +0.8
5,958,975 - +0.6
5,959,039 + -0.1
5,959,041 + +0.3
5,959,041 + +0.5
5,959,041 + -0.7
5,959,042 - -1.2
5,959,130 + -0.4
5,959,177 - -0.0
5,959,239 + -1.0
5,959,240 - +2.2
5,959,240 - -0.1
5,959,404 + Pf6N2E2_5171 0.11 -1.2
5,959,405 - Pf6N2E2_5171 0.11 -0.1
5,959,405 - Pf6N2E2_5171 0.11 -0.9
5,959,405 - Pf6N2E2_5171 0.11 +0.0
5,959,405 - Pf6N2E2_5171 0.11 -0.8
5,959,455 + Pf6N2E2_5171 0.14 -1.1
5,959,455 + Pf6N2E2_5171 0.14 -1.0
5,959,629 + Pf6N2E2_5171 0.21 -1.2
5,959,629 + Pf6N2E2_5171 0.21 -1.2
5,959,629 + Pf6N2E2_5171 0.21 -0.5
5,959,629 + Pf6N2E2_5171 0.21 -1.7
5,959,629 + Pf6N2E2_5171 0.21 +0.4
5,959,629 + Pf6N2E2_5171 0.21 -2.9
5,959,629 + Pf6N2E2_5171 0.21 -0.6
5,959,629 + Pf6N2E2_5171 0.21 +2.4
5,959,630 - Pf6N2E2_5171 0.21 -0.7
5,959,630 - Pf6N2E2_5171 0.21 -1.4
5,959,682 + Pf6N2E2_5171 0.24 -1.7
5,959,682 + Pf6N2E2_5171 0.24 -0.9
5,959,683 - Pf6N2E2_5171 0.24 -2.4
5,959,683 - Pf6N2E2_5171 0.24 +0.2
5,959,683 - Pf6N2E2_5171 0.24 -0.4
5,959,683 - Pf6N2E2_5171 0.24 -0.0
5,959,683 - Pf6N2E2_5171 0.24 -2.1
5,959,746 + Pf6N2E2_5171 0.27 -0.6
5,959,746 + Pf6N2E2_5171 0.27 +0.5
5,959,747 - Pf6N2E2_5171 0.27 +0.4
5,959,747 - Pf6N2E2_5171 0.27 -1.2
5,959,818 + Pf6N2E2_5171 0.30 -0.7
5,959,845 + Pf6N2E2_5171 0.31 +1.5
5,959,845 + Pf6N2E2_5171 0.31 -1.0
5,959,846 - Pf6N2E2_5171 0.31 -1.1
5,959,858 + Pf6N2E2_5171 0.32 -1.4
5,959,858 + Pf6N2E2_5171 0.32 -0.8
5,959,858 + Pf6N2E2_5171 0.32 -1.9
5,959,858 + Pf6N2E2_5171 0.32 -1.0
5,959,858 + Pf6N2E2_5171 0.32 +0.2
5,959,858 + Pf6N2E2_5171 0.32 -0.3
5,959,859 - Pf6N2E2_5171 0.32 +0.2
5,959,859 - Pf6N2E2_5171 0.32 -2.0
5,959,859 - Pf6N2E2_5171 0.32 -1.0
5,959,859 - Pf6N2E2_5171 0.32 -0.9
5,959,862 + Pf6N2E2_5171 0.32 +0.2
5,959,995 + Pf6N2E2_5171 0.38 -0.0
5,959,995 + Pf6N2E2_5171 0.38 -0.2
5,959,995 + Pf6N2E2_5171 0.38 +0.4
5,959,995 + Pf6N2E2_5171 0.38 -2.6
5,959,995 + Pf6N2E2_5171 0.38 -2.1
5,959,995 + Pf6N2E2_5171 0.38 -1.6
5,959,995 + Pf6N2E2_5171 0.38 -0.8
5,959,995 + Pf6N2E2_5171 0.38 -1.4
5,959,995 + Pf6N2E2_5171 0.38 -0.9
5,959,996 - Pf6N2E2_5171 0.38 -0.5
5,959,996 - Pf6N2E2_5171 0.38 -1.6
5,959,996 - Pf6N2E2_5171 0.38 -1.1
5,959,996 - Pf6N2E2_5171 0.38 -0.2
5,959,996 - Pf6N2E2_5171 0.38 -0.9
5,959,996 - Pf6N2E2_5171 0.38 -2.0
5,959,996 - Pf6N2E2_5171 0.38 -0.9
5,960,469 + Pf6N2E2_5171 0.59 -0.2
5,960,469 + Pf6N2E2_5171 0.59 -2.4
5,960,499 + Pf6N2E2_5171 0.61 -0.1
5,960,499 + Pf6N2E2_5171 0.61 +0.4
5,960,500 - Pf6N2E2_5171 0.61 -0.9
5,960,500 - Pf6N2E2_5171 0.61 -1.5
5,960,577 + Pf6N2E2_5171 0.64 -0.5
5,960,577 + Pf6N2E2_5171 0.64 -0.8
5,960,577 + Pf6N2E2_5171 0.64 -0.8
5,960,577 + Pf6N2E2_5171 0.64 -1.0
5,960,578 - Pf6N2E2_5171 0.64 -0.8
5,960,578 - Pf6N2E2_5171 0.64 -4.5
5,960,578 - Pf6N2E2_5171 0.64 -1.7
5,960,578 - Pf6N2E2_5171 0.64 -0.2
5,960,578 - Pf6N2E2_5171 0.64 -0.2
5,960,578 - Pf6N2E2_5171 0.64 -3.7
5,960,578 - Pf6N2E2_5171 0.64 -1.2
5,960,578 - Pf6N2E2_5171 0.64 -1.0
5,960,578 - Pf6N2E2_5171 0.64 -0.3
5,960,578 - Pf6N2E2_5171 0.64 +0.8
5,960,631 + Pf6N2E2_5171 0.67 -0.7
5,960,631 + Pf6N2E2_5171 0.67 -1.8
5,960,631 + Pf6N2E2_5171 0.67 -1.0
5,960,631 + Pf6N2E2_5171 0.67 -1.0
5,960,631 + Pf6N2E2_5171 0.67 -1.2
5,960,631 + Pf6N2E2_5171 0.67 -1.4
5,960,631 + Pf6N2E2_5171 0.67 +0.0
5,960,631 + Pf6N2E2_5171 0.67 -1.1
5,960,631 + Pf6N2E2_5171 0.67 -0.3
5,960,632 - Pf6N2E2_5171 0.67 -0.1
5,960,632 - Pf6N2E2_5171 0.67 +0.2
5,960,680 + Pf6N2E2_5171 0.69 -2.4
5,960,759 - Pf6N2E2_5171 0.72 +0.2
5,960,784 + Pf6N2E2_5171 0.73 -2.0
5,960,784 + Pf6N2E2_5171 0.73 -0.3
5,960,784 + Pf6N2E2_5171 0.73 -1.9
5,960,784 + Pf6N2E2_5171 0.73 -2.7
5,960,784 + Pf6N2E2_5171 0.73 -1.4
5,960,785 - Pf6N2E2_5171 0.74 -1.9
5,960,813 + Pf6N2E2_5171 0.75 -0.6
5,960,814 - Pf6N2E2_5171 0.75 -1.0
5,960,970 + Pf6N2E2_5171 0.82 -1.2
5,960,970 + Pf6N2E2_5171 0.82 -0.1
5,960,970 + Pf6N2E2_5171 0.82 -0.1
5,960,970 + Pf6N2E2_5171 0.82 -0.1
5,960,970 + Pf6N2E2_5171 0.82 +0.5
5,960,971 - Pf6N2E2_5171 0.82 -0.0
5,961,276 + -0.5
5,961,276 + -2.0
5,961,276 + -1.7
5,961,277 - +0.2
5,961,277 - -1.1
5,961,278 + +3.0
5,961,279 - +0.6
5,961,369 + -1.4
5,961,369 + -0.2
5,961,369 + +0.7
5,961,369 + -0.1
5,961,369 + +0.3
5,961,370 - -0.4
5,961,370 - +0.3
5,961,444 + +0.5
5,961,444 + -0.6
5,961,445 - -0.3
5,961,449 + +0.4
5,961,449 + -1.9
5,961,449 + -1.3
5,961,715 + Pf6N2E2_5172 0.45 -0.2
5,961,715 + Pf6N2E2_5172 0.45 -0.8
5,961,715 + Pf6N2E2_5172 0.45 +1.0
5,961,716 - Pf6N2E2_5172 0.46 -0.6
5,961,716 - Pf6N2E2_5172 0.46 -1.3
5,961,716 - Pf6N2E2_5172 0.46 -1.4
5,962,293 - Pf6N2E2_5173 0.56 -1.0
5,962,356 + Pf6N2E2_5173 0.75 +0.7
5,962,356 + Pf6N2E2_5173 0.75 +0.6
5,962,357 - Pf6N2E2_5173 0.76 +1.0
5,962,357 - Pf6N2E2_5173 0.76 -0.6
5,962,357 - Pf6N2E2_5173 0.76 -0.1
5,962,357 - Pf6N2E2_5173 0.76 +0.0

Or see this region's nucleotide sequence