Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4304

Experiment: A22 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4303 and Pf6N2E2_4304 are separated by 10 nucleotidesPf6N2E2_4304 and Pf6N2E2_4305 are separated by 57 nucleotidesPf6N2E2_4305 and Pf6N2E2_4306 are separated by 19 nucleotides Pf6N2E2_4303 - ClpB protein, at 5,017,856 to 5,020,441 _4303 Pf6N2E2_4304 - Sigma-54 dependent transcriptional regulator, at 5,020,452 to 5,021,969 _4304 Pf6N2E2_4305 - FIG00959590: hypothetical protein, at 5,022,027 to 5,022,167 _4305 Pf6N2E2_4306 - Uncharacterized protein ImpI/VasC, at 5,022,187 to 5,023,032 _4306 Position (kb) 5020 5021 5022Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5019.557 kb on - strand, within Pf6N2E2_4303at 5019.717 kb on - strand, within Pf6N2E2_4303at 5019.772 kb on + strand, within Pf6N2E2_4303at 5019.773 kb on - strand, within Pf6N2E2_4303at 5019.773 kb on - strand, within Pf6N2E2_4303at 5019.806 kb on + strand, within Pf6N2E2_4303at 5019.806 kb on + strand, within Pf6N2E2_4303at 5020.089 kb on + strand, within Pf6N2E2_4303at 5020.090 kb on - strand, within Pf6N2E2_4303at 5020.142 kb on + strand, within Pf6N2E2_4303at 5020.146 kb on - strand, within Pf6N2E2_4303at 5020.167 kb on + strand, within Pf6N2E2_4303at 5020.168 kb on - strand, within Pf6N2E2_4303at 5020.168 kb on - strand, within Pf6N2E2_4303at 5020.238 kb on + strandat 5020.239 kb on - strandat 5020.282 kb on + strandat 5020.282 kb on + strandat 5020.282 kb on + strandat 5020.392 kb on + strandat 5020.392 kb on + strandat 5020.392 kb on + strandat 5020.392 kb on + strandat 5020.393 kb on - strandat 5020.393 kb on - strandat 5020.393 kb on - strandat 5020.482 kb on + strandat 5020.482 kb on + strandat 5020.483 kb on - strandat 5020.483 kb on - strandat 5020.602 kb on + strandat 5020.602 kb on + strandat 5020.602 kb on + strandat 5020.602 kb on + strandat 5020.699 kb on - strand, within Pf6N2E2_4304at 5020.762 kb on + strand, within Pf6N2E2_4304at 5020.873 kb on + strand, within Pf6N2E2_4304at 5020.874 kb on - strand, within Pf6N2E2_4304at 5020.963 kb on + strand, within Pf6N2E2_4304at 5020.963 kb on + strand, within Pf6N2E2_4304at 5020.964 kb on - strand, within Pf6N2E2_4304at 5020.997 kb on - strand, within Pf6N2E2_4304at 5021.004 kb on - strand, within Pf6N2E2_4304at 5021.031 kb on + strand, within Pf6N2E2_4304at 5021.032 kb on - strand, within Pf6N2E2_4304at 5021.045 kb on + strand, within Pf6N2E2_4304at 5021.046 kb on - strand, within Pf6N2E2_4304at 5021.085 kb on - strand, within Pf6N2E2_4304at 5021.104 kb on - strand, within Pf6N2E2_4304at 5021.195 kb on + strand, within Pf6N2E2_4304at 5021.195 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.511 kb on + strand, within Pf6N2E2_4304at 5021.512 kb on - strand, within Pf6N2E2_4304at 5021.512 kb on - strand, within Pf6N2E2_4304at 5021.512 kb on - strand, within Pf6N2E2_4304at 5021.710 kb on + strand, within Pf6N2E2_4304at 5021.710 kb on + strand, within Pf6N2E2_4304at 5021.711 kb on - strand, within Pf6N2E2_4304at 5021.768 kb on - strand, within Pf6N2E2_4304at 5021.806 kb on + strand, within Pf6N2E2_4304at 5021.806 kb on + strand, within Pf6N2E2_4304at 5021.807 kb on - strand, within Pf6N2E2_4304at 5021.922 kb on + strandat 5021.922 kb on + strandat 5022.093 kb on - strand, within Pf6N2E2_4305at 5022.124 kb on - strand, within Pf6N2E2_4305at 5022.162 kb on - strandat 5022.180 kb on + strandat 5022.180 kb on + strandat 5022.181 kb on - strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.233 kb on + strandat 5022.234 kb on - strandat 5022.420 kb on - strand, within Pf6N2E2_4306at 5022.450 kb on - strand, within Pf6N2E2_4306at 5022.466 kb on + strand, within Pf6N2E2_4306at 5022.466 kb on + strand, within Pf6N2E2_4306at 5022.466 kb on + strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.691 kb on + strand, within Pf6N2E2_4306at 5022.691 kb on + strand, within Pf6N2E2_4306at 5022.699 kb on + strand, within Pf6N2E2_4306at 5022.699 kb on + strand, within Pf6N2E2_4306

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
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5,019,557 - Pf6N2E2_4303 0.66 -0.2
5,019,717 - Pf6N2E2_4303 0.72 -0.2
5,019,772 + Pf6N2E2_4303 0.74 +1.2
5,019,773 - Pf6N2E2_4303 0.74 -0.2
5,019,773 - Pf6N2E2_4303 0.74 +0.3
5,019,806 + Pf6N2E2_4303 0.75 -0.9
5,019,806 + Pf6N2E2_4303 0.75 -0.5
5,020,089 + Pf6N2E2_4303 0.86 +1.7
5,020,090 - Pf6N2E2_4303 0.86 -0.2
5,020,142 + Pf6N2E2_4303 0.88 -0.4
5,020,146 - Pf6N2E2_4303 0.89 +0.9
5,020,167 + Pf6N2E2_4303 0.89 +0.4
5,020,168 - Pf6N2E2_4303 0.89 -0.9
5,020,168 - Pf6N2E2_4303 0.89 +0.9
5,020,238 + +1.2
5,020,239 - +0.2
5,020,282 + +0.8
5,020,282 + -0.8
5,020,282 + +0.3
5,020,392 + +0.1
5,020,392 + +0.3
5,020,392 + -0.4
5,020,392 + -0.5
5,020,393 - +0.2
5,020,393 - +1.9
5,020,393 - +1.3
5,020,482 + -0.1
5,020,482 + +1.1
5,020,483 - -0.5
5,020,483 - +0.6
5,020,602 + -0.1
5,020,602 + +0.1
5,020,602 + +0.1
5,020,602 + +3.0
5,020,699 - Pf6N2E2_4304 0.16 +0.8
5,020,762 + Pf6N2E2_4304 0.20 -0.7
5,020,873 + Pf6N2E2_4304 0.28 -0.1
5,020,874 - Pf6N2E2_4304 0.28 +0.9
5,020,963 + Pf6N2E2_4304 0.34 -0.5
5,020,963 + Pf6N2E2_4304 0.34 +0.2
5,020,964 - Pf6N2E2_4304 0.34 -0.7
5,020,997 - Pf6N2E2_4304 0.36 +0.0
5,021,004 - Pf6N2E2_4304 0.36 -1.2
5,021,031 + Pf6N2E2_4304 0.38 -0.1
5,021,032 - Pf6N2E2_4304 0.38 -0.8
5,021,045 + Pf6N2E2_4304 0.39 -0.4
5,021,046 - Pf6N2E2_4304 0.39 -1.1
5,021,085 - Pf6N2E2_4304 0.42 +0.4
5,021,104 - Pf6N2E2_4304 0.43 +0.2
5,021,195 + Pf6N2E2_4304 0.49 +3.5
5,021,195 + Pf6N2E2_4304 0.49 +0.2
5,021,511 + Pf6N2E2_4304 0.70 -0.7
5,021,511 + Pf6N2E2_4304 0.70 -0.5
5,021,511 + Pf6N2E2_4304 0.70 +0.6
5,021,511 + Pf6N2E2_4304 0.70 -0.7
5,021,511 + Pf6N2E2_4304 0.70 -0.2
5,021,511 + Pf6N2E2_4304 0.70 +0.9
5,021,512 - Pf6N2E2_4304 0.70 -0.3
5,021,512 - Pf6N2E2_4304 0.70 -0.3
5,021,512 - Pf6N2E2_4304 0.70 +0.4
5,021,710 + Pf6N2E2_4304 0.83 -0.6
5,021,710 + Pf6N2E2_4304 0.83 -0.2
5,021,711 - Pf6N2E2_4304 0.83 -0.7
5,021,768 - Pf6N2E2_4304 0.87 -0.7
5,021,806 + Pf6N2E2_4304 0.89 -0.7
5,021,806 + Pf6N2E2_4304 0.89 -3.0
5,021,807 - Pf6N2E2_4304 0.89 +0.6
5,021,922 + -1.4
5,021,922 + -0.6
5,022,093 - Pf6N2E2_4305 0.47 +1.1
5,022,124 - Pf6N2E2_4305 0.69 -0.4
5,022,162 - +0.8
5,022,180 + -1.0
5,022,180 + +0.5
5,022,181 - -0.5
5,022,184 + -1.5
5,022,184 + -1.1
5,022,184 + -2.2
5,022,184 + -1.6
5,022,184 + -0.9
5,022,185 - -0.5
5,022,185 - -0.5
5,022,185 - +0.1
5,022,185 - +0.6
5,022,185 - -0.0
5,022,233 + -0.5
5,022,234 - -0.8
5,022,420 - Pf6N2E2_4306 0.28 -1.5
5,022,450 - Pf6N2E2_4306 0.31 -1.1
5,022,466 + Pf6N2E2_4306 0.33 +0.0
5,022,466 + Pf6N2E2_4306 0.33 +0.3
5,022,466 + Pf6N2E2_4306 0.33 +1.2
5,022,467 - Pf6N2E2_4306 0.33 +0.2
5,022,467 - Pf6N2E2_4306 0.33 +2.2
5,022,467 - Pf6N2E2_4306 0.33 -0.6
5,022,467 - Pf6N2E2_4306 0.33 -0.5
5,022,691 + Pf6N2E2_4306 0.60 +0.8
5,022,691 + Pf6N2E2_4306 0.60 -0.3
5,022,699 + Pf6N2E2_4306 0.61 -0.6
5,022,699 + Pf6N2E2_4306 0.61 -0.0

Or see this region's nucleotide sequence