Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3849

Experiment: A22 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3846 and Pf6N2E2_3847 overlap by 4 nucleotidesPf6N2E2_3847 and Pf6N2E2_6127 are separated by 102 nucleotidesPf6N2E2_6127 and Pf6N2E2_3848 are separated by 119 nucleotidesPf6N2E2_3848 and Pf6N2E2_3849 are separated by 61 nucleotidesPf6N2E2_3849 and Pf6N2E2_3850 are separated by 223 nucleotides Pf6N2E2_3846 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 4,479,537 to 4,480,604 _3846 Pf6N2E2_3847 - FIG001341: Probable Fe(2+)-trafficking protein YggX, at 4,480,601 to 4,480,873 _3847 Pf6N2E2_6127 - tRNA-Phe-GAA, at 4,480,976 to 4,481,048 _6127 Pf6N2E2_3848 - hypothetical protein, at 4,481,168 to 4,481,497 _3848 Pf6N2E2_3849 - FIG00954739: hypothetical protein, at 4,481,559 to 4,481,966 _3849 Pf6N2E2_3850 - FIG074102: hypothetical protein, at 4,482,190 to 4,483,239 _3850 Position (kb) 4481 4482Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4480.688 kb on - strand, within Pf6N2E2_3847at 4480.688 kb on - strand, within Pf6N2E2_3847at 4480.691 kb on + strand, within Pf6N2E2_3847at 4480.691 kb on + strand, within Pf6N2E2_3847at 4480.692 kb on - strand, within Pf6N2E2_3847at 4480.692 kb on - strand, within Pf6N2E2_3847at 4480.692 kb on - strand, within Pf6N2E2_3847at 4480.692 kb on - strand, within Pf6N2E2_3847at 4480.692 kb on - strand, within Pf6N2E2_3847at 4480.794 kb on - strand, within Pf6N2E2_3847at 4480.835 kb on + strand, within Pf6N2E2_3847at 4480.853 kb on + strandat 4480.857 kb on + strandat 4480.858 kb on - strandat 4480.871 kb on + strandat 4480.898 kb on + strandat 4480.919 kb on + strandat 4481.093 kb on - strandat 4481.132 kb on + strandat 4481.133 kb on - strandat 4481.221 kb on + strand, within Pf6N2E2_3848at 4481.222 kb on - strand, within Pf6N2E2_3848at 4481.222 kb on - strand, within Pf6N2E2_3848at 4481.252 kb on + strand, within Pf6N2E2_3848at 4481.300 kb on + strand, within Pf6N2E2_3848at 4481.300 kb on + strand, within Pf6N2E2_3848at 4481.300 kb on + strand, within Pf6N2E2_3848at 4481.301 kb on - strand, within Pf6N2E2_3848at 4481.302 kb on + strand, within Pf6N2E2_3848at 4481.302 kb on + strand, within Pf6N2E2_3848at 4481.302 kb on + strand, within Pf6N2E2_3848at 4481.303 kb on - strand, within Pf6N2E2_3848at 4481.303 kb on - strand, within Pf6N2E2_3848at 4481.303 kb on - strand, within Pf6N2E2_3848at 4481.303 kb on - strand, within Pf6N2E2_3848at 4481.375 kb on - strand, within Pf6N2E2_3848at 4481.423 kb on + strand, within Pf6N2E2_3848at 4481.424 kb on - strand, within Pf6N2E2_3848at 4481.430 kb on + strand, within Pf6N2E2_3848at 4481.430 kb on + strand, within Pf6N2E2_3848at 4481.430 kb on + strand, within Pf6N2E2_3848at 4481.431 kb on - strand, within Pf6N2E2_3848at 4481.431 kb on - strand, within Pf6N2E2_3848at 4481.431 kb on - strand, within Pf6N2E2_3848at 4481.487 kb on + strandat 4481.487 kb on + strandat 4481.488 kb on - strandat 4481.524 kb on + strandat 4481.524 kb on + strandat 4481.524 kb on + strandat 4481.525 kb on - strandat 4481.529 kb on + strandat 4481.529 kb on + strandat 4481.529 kb on + strandat 4481.529 kb on + strandat 4481.530 kb on - strandat 4481.530 kb on - strandat 4481.530 kb on - strandat 4481.530 kb on - strandat 4481.539 kb on + strandat 4481.834 kb on + strand, within Pf6N2E2_3849at 4481.925 kb on + strand, within Pf6N2E2_3849at 4481.925 kb on + strand, within Pf6N2E2_3849at 4481.926 kb on - strandat 4482.036 kb on + strandat 4482.036 kb on + strandat 4482.036 kb on + strandat 4482.058 kb on + strandat 4482.058 kb on + strandat 4482.058 kb on + strandat 4482.059 kb on - strandat 4482.059 kb on - strandat 4482.096 kb on + strandat 4482.097 kb on - strandat 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.333 kb on + strand, within Pf6N2E2_3850at 4482.334 kb on - strand, within Pf6N2E2_3850at 4482.334 kb on - strand, within Pf6N2E2_3850at 4482.334 kb on - strand, within Pf6N2E2_3850at 4482.334 kb on - strand, within Pf6N2E2_3850at 4482.334 kb on - strand, within Pf6N2E2_3850at 4482.334 kb on - strand, within Pf6N2E2_3850at 4482.334 kb on - strand, within Pf6N2E2_3850at 4482.334 kb on - strand, within Pf6N2E2_3850at 4482.334 kb on - strand, within Pf6N2E2_3850at 4482.373 kb on + strand, within Pf6N2E2_3850at 4482.469 kb on + strand, within Pf6N2E2_3850at 4482.469 kb on + strand, within Pf6N2E2_3850at 4482.470 kb on - strand, within Pf6N2E2_3850at 4482.568 kb on + strand, within Pf6N2E2_3850at 4482.568 kb on + strand, within Pf6N2E2_3850at 4482.568 kb on + strand, within Pf6N2E2_3850at 4482.568 kb on + strand, within Pf6N2E2_3850at 4482.568 kb on + strand, within Pf6N2E2_3850at 4482.568 kb on + strand, within Pf6N2E2_3850at 4482.568 kb on + strand, within Pf6N2E2_3850at 4482.568 kb on + strand, within Pf6N2E2_3850at 4482.568 kb on + strand, within Pf6N2E2_3850at 4482.569 kb on - strand, within Pf6N2E2_3850at 4482.569 kb on - strand, within Pf6N2E2_3850at 4482.569 kb on - strand, within Pf6N2E2_3850at 4482.569 kb on - strand, within Pf6N2E2_3850at 4482.569 kb on - strand, within Pf6N2E2_3850at 4482.569 kb on - strand, within Pf6N2E2_3850at 4482.569 kb on - strand, within Pf6N2E2_3850at 4482.634 kb on + strand, within Pf6N2E2_3850at 4482.634 kb on + strand, within Pf6N2E2_3850at 4482.634 kb on + strand, within Pf6N2E2_3850at 4482.634 kb on + strand, within Pf6N2E2_3850at 4482.634 kb on + strand, within Pf6N2E2_3850at 4482.635 kb on - strand, within Pf6N2E2_3850at 4482.635 kb on - strand, within Pf6N2E2_3850at 4482.635 kb on - strand, within Pf6N2E2_3850at 4482.637 kb on + strand, within Pf6N2E2_3850at 4482.637 kb on + strand, within Pf6N2E2_3850at 4482.638 kb on - strand, within Pf6N2E2_3850at 4482.821 kb on + strand, within Pf6N2E2_3850at 4482.821 kb on + strand, within Pf6N2E2_3850at 4482.822 kb on - strand, within Pf6N2E2_3850at 4482.922 kb on + strand, within Pf6N2E2_3850at 4482.922 kb on + strand, within Pf6N2E2_3850at 4482.922 kb on + strand, within Pf6N2E2_3850at 4482.922 kb on + strand, within Pf6N2E2_3850at 4482.922 kb on + strand, within Pf6N2E2_3850at 4482.923 kb on - strand, within Pf6N2E2_3850at 4482.923 kb on - strand, within Pf6N2E2_3850at 4482.928 kb on + strand, within Pf6N2E2_3850at 4482.928 kb on + strand, within Pf6N2E2_3850at 4482.928 kb on + strand, within Pf6N2E2_3850at 4482.928 kb on + strand, within Pf6N2E2_3850at 4482.928 kb on + strand, within Pf6N2E2_3850at 4482.928 kb on + strand, within Pf6N2E2_3850at 4482.928 kb on + strand, within Pf6N2E2_3850at 4482.928 kb on + strand, within Pf6N2E2_3850at 4482.929 kb on - strand, within Pf6N2E2_3850at 4482.929 kb on - strand, within Pf6N2E2_3850at 4482.929 kb on - strandat 4482.947 kb on + strand, within Pf6N2E2_3850

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
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4,480,688 - Pf6N2E2_3847 0.32 -0.9
4,480,688 - Pf6N2E2_3847 0.32 +0.8
4,480,691 + Pf6N2E2_3847 0.33 +1.1
4,480,691 + Pf6N2E2_3847 0.33 -1.9
4,480,692 - Pf6N2E2_3847 0.33 +1.6
4,480,692 - Pf6N2E2_3847 0.33 +1.2
4,480,692 - Pf6N2E2_3847 0.33 -0.5
4,480,692 - Pf6N2E2_3847 0.33 +0.9
4,480,692 - Pf6N2E2_3847 0.33 +0.9
4,480,794 - Pf6N2E2_3847 0.71 +2.5
4,480,835 + Pf6N2E2_3847 0.86 -0.3
4,480,853 + +0.4
4,480,857 + -0.1
4,480,858 - +0.3
4,480,871 + -0.3
4,480,898 + -0.1
4,480,919 + -0.6
4,481,093 - +0.3
4,481,132 + +0.5
4,481,133 - -0.1
4,481,221 + Pf6N2E2_3848 0.16 -0.4
4,481,222 - Pf6N2E2_3848 0.16 +1.2
4,481,222 - Pf6N2E2_3848 0.16 +0.5
4,481,252 + Pf6N2E2_3848 0.25 -0.2
4,481,300 + Pf6N2E2_3848 0.40 +0.1
4,481,300 + Pf6N2E2_3848 0.40 -0.5
4,481,300 + Pf6N2E2_3848 0.40 +0.8
4,481,301 - Pf6N2E2_3848 0.40 -0.4
4,481,302 + Pf6N2E2_3848 0.41 +0.3
4,481,302 + Pf6N2E2_3848 0.41 +0.1
4,481,302 + Pf6N2E2_3848 0.41 -0.3
4,481,303 - Pf6N2E2_3848 0.41 +0.3
4,481,303 - Pf6N2E2_3848 0.41 +1.9
4,481,303 - Pf6N2E2_3848 0.41 +0.9
4,481,303 - Pf6N2E2_3848 0.41 +1.6
4,481,375 - Pf6N2E2_3848 0.63 +0.4
4,481,423 + Pf6N2E2_3848 0.77 +2.3
4,481,424 - Pf6N2E2_3848 0.78 -0.0
4,481,430 + Pf6N2E2_3848 0.79 +0.0
4,481,430 + Pf6N2E2_3848 0.79 +0.9
4,481,430 + Pf6N2E2_3848 0.79 +0.0
4,481,431 - Pf6N2E2_3848 0.80 +0.0
4,481,431 - Pf6N2E2_3848 0.80 +0.5
4,481,431 - Pf6N2E2_3848 0.80 -1.1
4,481,487 + -0.4
4,481,487 + -0.1
4,481,488 - +1.4
4,481,524 + +0.5
4,481,524 + -0.7
4,481,524 + +0.5
4,481,525 - +1.1
4,481,529 + +1.1
4,481,529 + -0.1
4,481,529 + +0.1
4,481,529 + +0.6
4,481,530 - +0.4
4,481,530 - -0.2
4,481,530 - +0.5
4,481,530 - +0.8
4,481,539 + +0.2
4,481,834 + Pf6N2E2_3849 0.67 +0.3
4,481,925 + Pf6N2E2_3849 0.90 -0.1
4,481,925 + Pf6N2E2_3849 0.90 -1.2
4,481,926 - -0.2
4,482,036 + +0.5
4,482,036 + +1.0
4,482,036 + +0.1
4,482,058 + +0.7
4,482,058 + +1.4
4,482,058 + -0.6
4,482,059 - +3.5
4,482,059 - +0.5
4,482,096 + +0.5
4,482,097 - +0.6
4,482,333 + Pf6N2E2_3850 0.14 +0.1
4,482,333 + Pf6N2E2_3850 0.14 -1.6
4,482,333 + Pf6N2E2_3850 0.14 +0.0
4,482,333 + Pf6N2E2_3850 0.14 -0.1
4,482,333 + Pf6N2E2_3850 0.14 +0.1
4,482,333 + Pf6N2E2_3850 0.14 -2.1
4,482,333 + Pf6N2E2_3850 0.14 -1.6
4,482,333 + Pf6N2E2_3850 0.14 +1.6
4,482,333 + Pf6N2E2_3850 0.14 +0.8
4,482,333 + Pf6N2E2_3850 0.14 -0.5
4,482,333 + Pf6N2E2_3850 0.14 +0.3
4,482,334 - Pf6N2E2_3850 0.14 +0.3
4,482,334 - Pf6N2E2_3850 0.14 +0.1
4,482,334 - Pf6N2E2_3850 0.14 +0.4
4,482,334 - Pf6N2E2_3850 0.14 +0.3
4,482,334 - Pf6N2E2_3850 0.14 +0.1
4,482,334 - Pf6N2E2_3850 0.14 -0.8
4,482,334 - Pf6N2E2_3850 0.14 +0.5
4,482,334 - Pf6N2E2_3850 0.14 -1.6
4,482,334 - Pf6N2E2_3850 0.14 +0.4
4,482,373 + Pf6N2E2_3850 0.17 -0.7
4,482,469 + Pf6N2E2_3850 0.27 +0.1
4,482,469 + Pf6N2E2_3850 0.27 +0.3
4,482,470 - Pf6N2E2_3850 0.27 +0.0
4,482,568 + Pf6N2E2_3850 0.36 +0.3
4,482,568 + Pf6N2E2_3850 0.36 -1.6
4,482,568 + Pf6N2E2_3850 0.36 -0.5
4,482,568 + Pf6N2E2_3850 0.36 -0.9
4,482,568 + Pf6N2E2_3850 0.36 -0.3
4,482,568 + Pf6N2E2_3850 0.36 -0.6
4,482,568 + Pf6N2E2_3850 0.36 +1.8
4,482,568 + Pf6N2E2_3850 0.36 +1.6
4,482,568 + Pf6N2E2_3850 0.36 -1.1
4,482,569 - Pf6N2E2_3850 0.36 -0.3
4,482,569 - Pf6N2E2_3850 0.36 -0.9
4,482,569 - Pf6N2E2_3850 0.36 -0.1
4,482,569 - Pf6N2E2_3850 0.36 -0.1
4,482,569 - Pf6N2E2_3850 0.36 +0.0
4,482,569 - Pf6N2E2_3850 0.36 +0.9
4,482,569 - Pf6N2E2_3850 0.36 +2.5
4,482,634 + Pf6N2E2_3850 0.42 +0.1
4,482,634 + Pf6N2E2_3850 0.42 -0.1
4,482,634 + Pf6N2E2_3850 0.42 -2.3
4,482,634 + Pf6N2E2_3850 0.42 +0.8
4,482,634 + Pf6N2E2_3850 0.42 +0.2
4,482,635 - Pf6N2E2_3850 0.42 +1.3
4,482,635 - Pf6N2E2_3850 0.42 +0.5
4,482,635 - Pf6N2E2_3850 0.42 -0.1
4,482,637 + Pf6N2E2_3850 0.43 +0.3
4,482,637 + Pf6N2E2_3850 0.43 +0.7
4,482,638 - Pf6N2E2_3850 0.43 -0.9
4,482,821 + Pf6N2E2_3850 0.60 -1.2
4,482,821 + Pf6N2E2_3850 0.60 +1.1
4,482,822 - Pf6N2E2_3850 0.60 -1.2
4,482,922 + Pf6N2E2_3850 0.70 +0.1
4,482,922 + Pf6N2E2_3850 0.70 +1.1
4,482,922 + Pf6N2E2_3850 0.70 -1.5
4,482,922 + Pf6N2E2_3850 0.70 +0.6
4,482,922 + Pf6N2E2_3850 0.70 -0.1
4,482,923 - Pf6N2E2_3850 0.70 +0.1
4,482,923 - Pf6N2E2_3850 0.70 +0.2
4,482,928 + Pf6N2E2_3850 0.70 +0.2
4,482,928 + Pf6N2E2_3850 0.70 +1.5
4,482,928 + Pf6N2E2_3850 0.70 -0.3
4,482,928 + Pf6N2E2_3850 0.70 -0.1
4,482,928 + Pf6N2E2_3850 0.70 +0.8
4,482,928 + Pf6N2E2_3850 0.70 -1.1
4,482,928 + Pf6N2E2_3850 0.70 +0.8
4,482,928 + Pf6N2E2_3850 0.70 +0.7
4,482,929 - Pf6N2E2_3850 0.70 +1.3
4,482,929 - Pf6N2E2_3850 0.70 +1.2
4,482,929 - +0.5
4,482,947 + Pf6N2E2_3850 0.72 -0.2

Or see this region's nucleotide sequence