Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_360 and Pf6N2E2_361 are separated by 43 nucleotides Pf6N2E2_361 and Pf6N2E2_362 are separated by 11 nucleotides Pf6N2E2_362 and Pf6N2E2_363 are separated by 1 nucleotides
Pf6N2E2_360 - ABC peptide transporter, periplasmic ligand binding protein, at 425,441 to 427,084
_360
Pf6N2E2_361 - Peptide ABC transporter, permease protein, at 427,128 to 428,084
_361
Pf6N2E2_362 - Dipeptide transport system permease protein dppC, at 428,096 to 428,956
_362
Pf6N2E2_363 - ATPase components of various ABC-type transport systems, contain duplicated ATPase, at 428,958 to 430,802
_363
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 426.172 kb on + strand, within Pf6N2E2_360 at 426.180 kb on - strand, within Pf6N2E2_360 at 426.180 kb on - strand, within Pf6N2E2_360 at 426.180 kb on - strand, within Pf6N2E2_360 at 426.201 kb on - strand, within Pf6N2E2_360 at 426.358 kb on + strand, within Pf6N2E2_360 at 426.358 kb on + strand, within Pf6N2E2_360 at 426.359 kb on - strand, within Pf6N2E2_360 at 426.362 kb on + strand, within Pf6N2E2_360 at 426.363 kb on - strand, within Pf6N2E2_360 at 426.363 kb on - strand, within Pf6N2E2_360 at 426.363 kb on - strand, within Pf6N2E2_360 at 426.363 kb on - strand, within Pf6N2E2_360 at 426.524 kb on + strand, within Pf6N2E2_360 at 426.524 kb on + strand, within Pf6N2E2_360 at 426.524 kb on + strand, within Pf6N2E2_360 at 426.525 kb on - strand, within Pf6N2E2_360 at 426.525 kb on - strand, within Pf6N2E2_360 at 426.551 kb on + strand, within Pf6N2E2_360 at 426.551 kb on + strand, within Pf6N2E2_360 at 426.551 kb on + strand, within Pf6N2E2_360 at 426.552 kb on - strand, within Pf6N2E2_360 at 426.552 kb on - strand, within Pf6N2E2_360 at 426.920 kb on + strand at 427.049 kb on + strand at 427.049 kb on + strand at 427.049 kb on + strand at 427.049 kb on + strand at 427.049 kb on + strand at 427.050 kb on - strand at 427.051 kb on + strand at 427.051 kb on + strand at 427.051 kb on + strand at 427.051 kb on + strand at 427.051 kb on + strand at 427.052 kb on - strand at 427.052 kb on - strand at 427.052 kb on - strand at 427.052 kb on - strand at 427.052 kb on - strand at 427.052 kb on - strand at 427.052 kb on - strand at 427.052 kb on - strand at 427.133 kb on + strand at 427.134 kb on - strand at 427.195 kb on + strand at 427.676 kb on + strand, within Pf6N2E2_361 at 427.676 kb on + strand, within Pf6N2E2_361 at 427.677 kb on - strand, within Pf6N2E2_361 at 427.677 kb on - strand, within Pf6N2E2_361 at 427.681 kb on - strand, within Pf6N2E2_361 at 427.885 kb on - strand, within Pf6N2E2_361 at 428.624 kb on + strand, within Pf6N2E2_362 at 428.625 kb on - strand, within Pf6N2E2_362 at 428.625 kb on - strand, within Pf6N2E2_362 at 428.625 kb on - strand, within Pf6N2E2_362 at 428.625 kb on - strand at 428.625 kb on - strand, within Pf6N2E2_362 at 428.664 kb on - strand, within Pf6N2E2_362 at 428.942 kb on - strand at 428.942 kb on - strand at 428.957 kb on + strand at 428.958 kb on - strand at 428.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 426,172 + Pf6N2E2_360 0.44 -0.6 426,180 - Pf6N2E2_360 0.45 +0.8 426,180 - Pf6N2E2_360 0.45 +0.1 426,180 - Pf6N2E2_360 0.45 +1.8 426,201 - Pf6N2E2_360 0.46 -1.4 426,358 + Pf6N2E2_360 0.56 +0.1 426,358 + Pf6N2E2_360 0.56 +1.2 426,359 - Pf6N2E2_360 0.56 -0.5 426,362 + Pf6N2E2_360 0.56 +0.3 426,363 - Pf6N2E2_360 0.56 +0.2 426,363 - Pf6N2E2_360 0.56 +0.4 426,363 - Pf6N2E2_360 0.56 +0.6 426,363 - Pf6N2E2_360 0.56 -0.4 426,524 + Pf6N2E2_360 0.66 -0.0 426,524 + Pf6N2E2_360 0.66 -0.4 426,524 + Pf6N2E2_360 0.66 -0.5 426,525 - Pf6N2E2_360 0.66 -0.0 426,525 - Pf6N2E2_360 0.66 -0.9 426,551 + Pf6N2E2_360 0.68 +0.5 426,551 + Pf6N2E2_360 0.68 +1.6 426,551 + Pf6N2E2_360 0.68 -0.0 426,552 - Pf6N2E2_360 0.68 +0.1 426,552 - Pf6N2E2_360 0.68 +1.6 426,920 + -0.9 427,049 + -0.3 427,049 + +0.8 427,049 + +0.8 427,049 + +0.6 427,049 + +0.5 427,050 - +1.0 427,051 + -0.4 427,051 + -1.3 427,051 + +2.0 427,051 + -0.2 427,051 + -0.0 427,052 - -1.5 427,052 - +0.5 427,052 - -0.2 427,052 - +0.6 427,052 - -1.0 427,052 - +0.7 427,052 - +0.1 427,052 - -0.7 427,133 + -0.7 427,134 - +1.2 427,195 + +0.2 427,676 + Pf6N2E2_361 0.57 -1.2 427,676 + Pf6N2E2_361 0.57 +0.0 427,677 - Pf6N2E2_361 0.57 -0.0 427,677 - Pf6N2E2_361 0.57 -0.2 427,681 - Pf6N2E2_361 0.58 -0.5 427,885 - Pf6N2E2_361 0.79 -1.3 428,624 + Pf6N2E2_362 0.61 -1.1 428,625 - Pf6N2E2_362 0.61 -1.9 428,625 - Pf6N2E2_362 0.61 +0.1 428,625 - Pf6N2E2_362 0.61 -0.1 428,625 - -1.4 428,625 - Pf6N2E2_362 0.61 -0.1 428,664 - Pf6N2E2_362 0.66 -0.1 428,942 - -0.0 428,942 - +1.2 428,957 + +0.1 428,958 - -1.0 428,958 - +0.3
Or see this region's nucleotide sequence