Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1781 and Pf6N2E2_1782 are separated by 16 nucleotides Pf6N2E2_1782 and Pf6N2E2_1783 are separated by 32 nucleotides Pf6N2E2_1783 and Pf6N2E2_1784 are separated by 11 nucleotides
Pf6N2E2_1781 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 2,106,229 to 2,108,358
_1781
Pf6N2E2_1782 - STAS domain protein, at 2,108,375 to 2,108,692
_1782
Pf6N2E2_1783 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 2,108,725 to 2,109,093
_1783
Pf6N2E2_1784 - Methyl-accepting chemotaxis protein, at 2,109,105 to 2,110,223
_1784
Position (kb)
2108
2109 Strain fitness (log2 ratio)
-2
-1
0
1 at 2107.404 kb on + strand, within Pf6N2E2_1781 at 2107.891 kb on - strand, within Pf6N2E2_1781 at 2107.891 kb on - strand, within Pf6N2E2_1781 at 2107.891 kb on - strand, within Pf6N2E2_1781 at 2107.891 kb on - strand, within Pf6N2E2_1781 at 2108.221 kb on - strand at 2108.339 kb on - strand at 2108.631 kb on + strand, within Pf6N2E2_1782 at 2108.632 kb on - strand, within Pf6N2E2_1782 at 2108.632 kb on - strand, within Pf6N2E2_1782 at 2108.632 kb on - strand, within Pf6N2E2_1782 at 2108.727 kb on - strand at 2108.873 kb on + strand, within Pf6N2E2_1783 at 2108.942 kb on - strand, within Pf6N2E2_1783 at 2108.942 kb on - strand, within Pf6N2E2_1783 at 2109.107 kb on - strand at 2109.131 kb on + strand at 2109.131 kb on + strand at 2109.132 kb on - strand at 2109.132 kb on - strand at 2109.184 kb on + strand at 2109.184 kb on + strand at 2109.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 2,107,404 + Pf6N2E2_1781 0.55 +0.4 2,107,891 - Pf6N2E2_1781 0.78 -0.4 2,107,891 - Pf6N2E2_1781 0.78 +0.1 2,107,891 - Pf6N2E2_1781 0.78 -0.1 2,107,891 - Pf6N2E2_1781 0.78 +0.4 2,108,221 - +0.8 2,108,339 - -1.2 2,108,631 + Pf6N2E2_1782 0.81 -0.7 2,108,632 - Pf6N2E2_1782 0.81 -1.0 2,108,632 - Pf6N2E2_1782 0.81 -0.5 2,108,632 - Pf6N2E2_1782 0.81 +1.4 2,108,727 - +0.6 2,108,873 + Pf6N2E2_1783 0.40 +1.7 2,108,942 - Pf6N2E2_1783 0.59 -1.4 2,108,942 - Pf6N2E2_1783 0.59 -0.1 2,109,107 - -1.1 2,109,131 + +0.2 2,109,131 + +0.4 2,109,132 - -2.3 2,109,132 - +0.5 2,109,184 + +0.4 2,109,184 + -0.3 2,109,185 - -0.0
Or see this region's nucleotide sequence