Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1055

Experiment: A22 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1054 and Pf6N2E2_1055 are separated by 153 nucleotidesPf6N2E2_1055 and Pf6N2E2_1056 are separated by 257 nucleotides Pf6N2E2_1054 - integrase, putative, at 1,228,092 to 1,229,360 _1054 Pf6N2E2_1055 - Transcriptional regulator MexT, at 1,229,514 to 1,230,428 _1055 Pf6N2E2_1056 - Quinone oxidoreductase (EC 1.6.5.5), at 1,230,686 to 1,231,711 _1056 Position (kb) 1229 1230 1231Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1228.811 kb on + strand, within Pf6N2E2_1054at 1228.811 kb on + strand, within Pf6N2E2_1054at 1228.869 kb on - strand, within Pf6N2E2_1054at 1229.011 kb on + strand, within Pf6N2E2_1054at 1229.012 kb on - strand, within Pf6N2E2_1054at 1229.245 kb on - strandat 1229.348 kb on + strandat 1229.621 kb on + strand, within Pf6N2E2_1055at 1229.621 kb on + strand, within Pf6N2E2_1055at 1229.621 kb on + strand, within Pf6N2E2_1055at 1229.622 kb on - strand, within Pf6N2E2_1055at 1229.687 kb on - strand, within Pf6N2E2_1055at 1229.687 kb on - strand, within Pf6N2E2_1055at 1229.804 kb on + strand, within Pf6N2E2_1055at 1229.901 kb on + strand, within Pf6N2E2_1055at 1229.901 kb on + strand, within Pf6N2E2_1055at 1229.902 kb on - strand, within Pf6N2E2_1055at 1229.902 kb on - strand, within Pf6N2E2_1055at 1229.930 kb on + strand, within Pf6N2E2_1055at 1229.930 kb on + strand, within Pf6N2E2_1055at 1229.931 kb on - strand, within Pf6N2E2_1055at 1229.931 kb on - strand, within Pf6N2E2_1055at 1229.963 kb on - strand, within Pf6N2E2_1055at 1229.963 kb on - strand, within Pf6N2E2_1055at 1230.016 kb on + strand, within Pf6N2E2_1055at 1230.016 kb on + strand, within Pf6N2E2_1055at 1230.016 kb on + strand, within Pf6N2E2_1055at 1230.016 kb on + strand, within Pf6N2E2_1055at 1230.017 kb on - strand, within Pf6N2E2_1055at 1230.017 kb on - strand, within Pf6N2E2_1055at 1230.017 kb on - strand, within Pf6N2E2_1055at 1230.254 kb on + strand, within Pf6N2E2_1055at 1230.255 kb on - strand, within Pf6N2E2_1055at 1230.255 kb on - strand, within Pf6N2E2_1055at 1230.255 kb on - strand, within Pf6N2E2_1055at 1230.258 kb on + strand, within Pf6N2E2_1055at 1230.259 kb on - strand, within Pf6N2E2_1055at 1230.259 kb on - strand, within Pf6N2E2_1055at 1230.259 kb on - strand, within Pf6N2E2_1055at 1230.259 kb on - strand, within Pf6N2E2_1055at 1230.259 kb on - strand, within Pf6N2E2_1055at 1230.419 kb on + strandat 1230.419 kb on + strandat 1230.420 kb on - strandat 1230.472 kb on - strandat 1230.547 kb on + strandat 1230.609 kb on + strandat 1230.609 kb on + strandat 1230.609 kb on + strandat 1230.660 kb on + strandat 1230.660 kb on + strandat 1230.660 kb on + strandat 1230.667 kb on + strandat 1230.667 kb on + strandat 1231.064 kb on + strand, within Pf6N2E2_1056at 1231.085 kb on + strand, within Pf6N2E2_1056

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
remove
1,228,811 + Pf6N2E2_1054 0.57 +0.0
1,228,811 + Pf6N2E2_1054 0.57 -0.1
1,228,869 - Pf6N2E2_1054 0.61 -0.2
1,229,011 + Pf6N2E2_1054 0.72 +0.3
1,229,012 - Pf6N2E2_1054 0.72 -0.1
1,229,245 - -0.6
1,229,348 + -0.4
1,229,621 + Pf6N2E2_1055 0.12 -1.3
1,229,621 + Pf6N2E2_1055 0.12 +1.4
1,229,621 + Pf6N2E2_1055 0.12 -1.0
1,229,622 - Pf6N2E2_1055 0.12 +0.1
1,229,687 - Pf6N2E2_1055 0.19 -1.4
1,229,687 - Pf6N2E2_1055 0.19 -1.8
1,229,804 + Pf6N2E2_1055 0.32 -0.6
1,229,901 + Pf6N2E2_1055 0.42 -0.8
1,229,901 + Pf6N2E2_1055 0.42 +1.0
1,229,902 - Pf6N2E2_1055 0.42 -1.0
1,229,902 - Pf6N2E2_1055 0.42 +1.2
1,229,930 + Pf6N2E2_1055 0.45 -1.4
1,229,930 + Pf6N2E2_1055 0.45 +1.0
1,229,931 - Pf6N2E2_1055 0.46 -0.9
1,229,931 - Pf6N2E2_1055 0.46 +0.6
1,229,963 - Pf6N2E2_1055 0.49 +1.3
1,229,963 - Pf6N2E2_1055 0.49 -1.2
1,230,016 + Pf6N2E2_1055 0.55 -0.7
1,230,016 + Pf6N2E2_1055 0.55 -0.4
1,230,016 + Pf6N2E2_1055 0.55 +0.3
1,230,016 + Pf6N2E2_1055 0.55 -2.1
1,230,017 - Pf6N2E2_1055 0.55 -0.9
1,230,017 - Pf6N2E2_1055 0.55 -0.3
1,230,017 - Pf6N2E2_1055 0.55 -0.2
1,230,254 + Pf6N2E2_1055 0.81 -1.4
1,230,255 - Pf6N2E2_1055 0.81 -0.8
1,230,255 - Pf6N2E2_1055 0.81 -0.2
1,230,255 - Pf6N2E2_1055 0.81 -0.9
1,230,258 + Pf6N2E2_1055 0.81 -2.2
1,230,259 - Pf6N2E2_1055 0.81 -0.8
1,230,259 - Pf6N2E2_1055 0.81 -1.6
1,230,259 - Pf6N2E2_1055 0.81 +0.8
1,230,259 - Pf6N2E2_1055 0.81 +0.6
1,230,259 - Pf6N2E2_1055 0.81 -0.7
1,230,419 + -0.6
1,230,419 + +0.3
1,230,420 - -1.3
1,230,472 - +3.8
1,230,547 + -1.3
1,230,609 + -0.6
1,230,609 + -0.2
1,230,609 + +1.0
1,230,660 + +4.1
1,230,660 + +5.1
1,230,660 + +4.0
1,230,667 + +2.3
1,230,667 + -2.1
1,231,064 + Pf6N2E2_1056 0.37 +1.1
1,231,085 + Pf6N2E2_1056 0.39 +1.9

Or see this region's nucleotide sequence