Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06785

Experiment: formate McAA nicotinic dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06775 and MMJJ_RS06780 are separated by 39 nucleotidesMMJJ_RS06780 and MMJJ_RS06785 are separated by 54 nucleotidesMMJJ_RS06785 and MMJJ_RS06790 are separated by 15 nucleotides MMJJ_RS06775: MMJJ_RS06775 - isoleucine--tRNA ligase, at 1,251,236 to 1,254,340 _RS06775 MMJJ_RS06780: MMJJ_RS06780 - DUF356 domain-containing protein, at 1,254,380 to 1,254,760 _RS06780 MMJJ_RS06785: MMJJ_RS06785 - RNA ligase partner protein, at 1,254,815 to 1,255,486 _RS06785 MMJJ_RS06790: MMJJ_RS06790 - nucleotidyltransferase family protein, at 1,255,502 to 1,256,551 _RS06790 Position (kb) 1254 1255 1256Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1253.831 kb on - strand, within MMJJ_RS06775at 1253.930 kb on - strand, within MMJJ_RS06775at 1254.422 kb on + strand, within MMJJ_RS06780at 1254.506 kb on - strand, within MMJJ_RS06780at 1254.799 kb on - strandat 1254.823 kb on - strandat 1254.851 kb on - strandat 1254.851 kb on - strandat 1254.971 kb on - strand, within MMJJ_RS06785at 1255.036 kb on - strand, within MMJJ_RS06785at 1255.075 kb on - strand, within MMJJ_RS06785at 1255.075 kb on - strand, within MMJJ_RS06785at 1255.104 kb on - strand, within MMJJ_RS06785at 1255.104 kb on - strand, within MMJJ_RS06785at 1255.104 kb on - strand, within MMJJ_RS06785at 1255.104 kb on - strand, within MMJJ_RS06785at 1255.104 kb on - strand, within MMJJ_RS06785at 1255.126 kb on + strand, within MMJJ_RS06785at 1255.142 kb on - strand, within MMJJ_RS06785at 1255.157 kb on + strand, within MMJJ_RS06785at 1255.181 kb on - strand, within MMJJ_RS06785at 1255.185 kb on - strand, within MMJJ_RS06785at 1255.186 kb on + strand, within MMJJ_RS06785at 1255.186 kb on + strand, within MMJJ_RS06785at 1255.186 kb on + strand, within MMJJ_RS06785at 1255.186 kb on + strand, within MMJJ_RS06785at 1255.191 kb on - strand, within MMJJ_RS06785at 1255.191 kb on - strand, within MMJJ_RS06785at 1255.196 kb on - strand, within MMJJ_RS06785at 1255.196 kb on - strand, within MMJJ_RS06785at 1255.196 kb on - strand, within MMJJ_RS06785at 1255.215 kb on + strand, within MMJJ_RS06785at 1255.222 kb on + strand, within MMJJ_RS06785at 1255.315 kb on - strand, within MMJJ_RS06785at 1255.315 kb on - strand, within MMJJ_RS06785at 1255.386 kb on + strand, within MMJJ_RS06785at 1255.447 kb on - strandat 1255.448 kb on + strandat 1255.460 kb on + strandat 1255.513 kb on - strandat 1255.514 kb on + strandat 1255.514 kb on + strandat 1255.517 kb on - strandat 1255.560 kb on - strandat 1255.570 kb on - strandat 1255.570 kb on - strandat 1255.571 kb on + strandat 1255.571 kb on + strandat 1255.584 kb on + strandat 1255.646 kb on + strand, within MMJJ_RS06790at 1255.646 kb on + strand, within MMJJ_RS06790at 1255.656 kb on + strand, within MMJJ_RS06790at 1255.675 kb on + strand, within MMJJ_RS06790at 1255.675 kb on + strand, within MMJJ_RS06790at 1255.677 kb on - strand, within MMJJ_RS06790at 1255.678 kb on + strand, within MMJJ_RS06790at 1255.719 kb on - strand, within MMJJ_RS06790at 1255.720 kb on + strand, within MMJJ_RS06790at 1255.796 kb on + strand, within MMJJ_RS06790at 1255.898 kb on - strand, within MMJJ_RS06790at 1255.899 kb on + strand, within MMJJ_RS06790at 1255.901 kb on + strand, within MMJJ_RS06790at 1255.995 kb on - strand, within MMJJ_RS06790at 1255.995 kb on - strand, within MMJJ_RS06790at 1255.995 kb on - strand, within MMJJ_RS06790at 1255.995 kb on - strand, within MMJJ_RS06790at 1255.995 kb on - strand, within MMJJ_RS06790at 1255.995 kb on - strand, within MMJJ_RS06790at 1255.995 kb on - strand, within MMJJ_RS06790at 1255.995 kb on - strand, within MMJJ_RS06790at 1255.996 kb on + strand, within MMJJ_RS06790at 1255.996 kb on + strand, within MMJJ_RS06790at 1255.996 kb on + strand, within MMJJ_RS06790at 1255.996 kb on + strand, within MMJJ_RS06790at 1255.996 kb on + strand, within MMJJ_RS06790at 1255.996 kb on + strand, within MMJJ_RS06790at 1255.996 kb on + strand, within MMJJ_RS06790at 1255.996 kb on + strand, within MMJJ_RS06790at 1256.053 kb on - strand, within MMJJ_RS06790at 1256.053 kb on - strand, within MMJJ_RS06790at 1256.053 kb on - strand, within MMJJ_RS06790at 1256.053 kb on - strand, within MMJJ_RS06790at 1256.053 kb on - strand, within MMJJ_RS06790at 1256.053 kb on - strand, within MMJJ_RS06790at 1256.053 kb on - strand, within MMJJ_RS06790at 1256.053 kb on - strand, within MMJJ_RS06790at 1256.054 kb on + strand, within MMJJ_RS06790at 1256.054 kb on + strand, within MMJJ_RS06790at 1256.054 kb on + strand, within MMJJ_RS06790at 1256.054 kb on + strand, within MMJJ_RS06790at 1256.054 kb on + strand, within MMJJ_RS06790at 1256.087 kb on - strand, within MMJJ_RS06790at 1256.095 kb on - strand, within MMJJ_RS06790at 1256.125 kb on - strand, within MMJJ_RS06790at 1256.126 kb on + strand, within MMJJ_RS06790at 1256.140 kb on - strand, within MMJJ_RS06790at 1256.140 kb on - strand, within MMJJ_RS06790at 1256.141 kb on + strand, within MMJJ_RS06790at 1256.143 kb on - strandat 1256.154 kb on + strand, within MMJJ_RS06790at 1256.154 kb on + strand, within MMJJ_RS06790at 1256.188 kb on + strand, within MMJJ_RS06790at 1256.203 kb on - strand, within MMJJ_RS06790at 1256.228 kb on - strand, within MMJJ_RS06790at 1256.229 kb on + strand, within MMJJ_RS06790at 1256.231 kb on - strand, within MMJJ_RS06790at 1256.283 kb on + strand, within MMJJ_RS06790at 1256.283 kb on + strand, within MMJJ_RS06790at 1256.283 kb on + strand, within MMJJ_RS06790at 1256.283 kb on + strand, within MMJJ_RS06790at 1256.287 kb on + strand, within MMJJ_RS06790at 1256.287 kb on + strand, within MMJJ_RS06790at 1256.327 kb on + strand, within MMJJ_RS06790at 1256.333 kb on - strand, within MMJJ_RS06790at 1256.333 kb on - strand, within MMJJ_RS06790at 1256.333 kb on - strand, within MMJJ_RS06790at 1256.334 kb on + strand, within MMJJ_RS06790at 1256.334 kb on + strand, within MMJJ_RS06790at 1256.334 kb on + strand, within MMJJ_RS06790at 1256.334 kb on + strand, within MMJJ_RS06790at 1256.334 kb on + strand, within MMJJ_RS06790at 1256.334 kb on + strand, within MMJJ_RS06790at 1256.334 kb on + strand, within MMJJ_RS06790at 1256.335 kb on - strand, within MMJJ_RS06790at 1256.335 kb on - strand, within MMJJ_RS06790at 1256.336 kb on + strand, within MMJJ_RS06790at 1256.370 kb on - strand, within MMJJ_RS06790at 1256.371 kb on + strand, within MMJJ_RS06790at 1256.371 kb on + strand, within MMJJ_RS06790at 1256.411 kb on - strand, within MMJJ_RS06790at 1256.412 kb on + strand, within MMJJ_RS06790at 1256.412 kb on + strand, within MMJJ_RS06790

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA nicotinic dropout
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1,253,831 - MMJJ_RS06775 0.84 -2.7
1,253,930 - MMJJ_RS06775 0.87 -1.1
1,254,422 + MMJJ_RS06780 0.11 +0.1
1,254,506 - MMJJ_RS06780 0.33 +0.8
1,254,799 - -2.4
1,254,823 - -1.1
1,254,851 - -3.4
1,254,851 - -1.3
1,254,971 - MMJJ_RS06785 0.23 -5.1
1,255,036 - MMJJ_RS06785 0.33 -3.5
1,255,075 - MMJJ_RS06785 0.39 -2.1
1,255,075 - MMJJ_RS06785 0.39 -2.2
1,255,104 - MMJJ_RS06785 0.43 -3.4
1,255,104 - MMJJ_RS06785 0.43 -0.6
1,255,104 - MMJJ_RS06785 0.43 -3.6
1,255,104 - MMJJ_RS06785 0.43 -3.4
1,255,104 - MMJJ_RS06785 0.43 -3.4
1,255,126 + MMJJ_RS06785 0.46 +0.1
1,255,142 - MMJJ_RS06785 0.49 -0.1
1,255,157 + MMJJ_RS06785 0.51 -2.1
1,255,181 - MMJJ_RS06785 0.54 -4.5
1,255,185 - MMJJ_RS06785 0.55 -1.5
1,255,186 + MMJJ_RS06785 0.55 -2.3
1,255,186 + MMJJ_RS06785 0.55 -3.8
1,255,186 + MMJJ_RS06785 0.55 -4.0
1,255,186 + MMJJ_RS06785 0.55 -2.8
1,255,191 - MMJJ_RS06785 0.56 -2.8
1,255,191 - MMJJ_RS06785 0.56 -1.4
1,255,196 - MMJJ_RS06785 0.57 -3.4
1,255,196 - MMJJ_RS06785 0.57 -2.5
1,255,196 - MMJJ_RS06785 0.57 -4.1
1,255,215 + MMJJ_RS06785 0.60 -3.5
1,255,222 + MMJJ_RS06785 0.61 -2.7
1,255,315 - MMJJ_RS06785 0.74 -2.6
1,255,315 - MMJJ_RS06785 0.74 -0.9
1,255,386 + MMJJ_RS06785 0.85 -2.8
1,255,447 - -2.2
1,255,448 + -3.2
1,255,460 + -1.2
1,255,513 - +0.4
1,255,514 + -0.5
1,255,514 + +0.0
1,255,517 - -0.3
1,255,560 - +0.3
1,255,570 - +0.2
1,255,570 - -0.4
1,255,571 + +0.4
1,255,571 + +0.9
1,255,584 + -0.6
1,255,646 + MMJJ_RS06790 0.14 -0.6
1,255,646 + MMJJ_RS06790 0.14 +0.3
1,255,656 + MMJJ_RS06790 0.15 -1.4
1,255,675 + MMJJ_RS06790 0.16 +0.9
1,255,675 + MMJJ_RS06790 0.16 +1.1
1,255,677 - MMJJ_RS06790 0.17 +0.4
1,255,678 + MMJJ_RS06790 0.17 -0.5
1,255,719 - MMJJ_RS06790 0.21 +0.3
1,255,720 + MMJJ_RS06790 0.21 +0.9
1,255,796 + MMJJ_RS06790 0.28 -1.5
1,255,898 - MMJJ_RS06790 0.38 -0.0
1,255,899 + MMJJ_RS06790 0.38 +0.7
1,255,901 + MMJJ_RS06790 0.38 -0.8
1,255,995 - MMJJ_RS06790 0.47 +0.5
1,255,995 - MMJJ_RS06790 0.47 +1.2
1,255,995 - MMJJ_RS06790 0.47 -0.1
1,255,995 - MMJJ_RS06790 0.47 +0.9
1,255,995 - MMJJ_RS06790 0.47 -0.2
1,255,995 - MMJJ_RS06790 0.47 -0.2
1,255,995 - MMJJ_RS06790 0.47 -0.6
1,255,995 - MMJJ_RS06790 0.47 +0.7
1,255,996 + MMJJ_RS06790 0.47 +0.6
1,255,996 + MMJJ_RS06790 0.47 +0.4
1,255,996 + MMJJ_RS06790 0.47 -0.0
1,255,996 + MMJJ_RS06790 0.47 +0.9
1,255,996 + MMJJ_RS06790 0.47 +0.5
1,255,996 + MMJJ_RS06790 0.47 -0.0
1,255,996 + MMJJ_RS06790 0.47 -0.3
1,255,996 + MMJJ_RS06790 0.47 -0.4
1,256,053 - MMJJ_RS06790 0.52 +1.2
1,256,053 - MMJJ_RS06790 0.52 +0.4
1,256,053 - MMJJ_RS06790 0.52 +0.7
1,256,053 - MMJJ_RS06790 0.52 +1.7
1,256,053 - MMJJ_RS06790 0.52 +1.1
1,256,053 - MMJJ_RS06790 0.52 -0.7
1,256,053 - MMJJ_RS06790 0.52 -0.1
1,256,053 - MMJJ_RS06790 0.52 +0.3
1,256,054 + MMJJ_RS06790 0.53 +0.9
1,256,054 + MMJJ_RS06790 0.53 -0.1
1,256,054 + MMJJ_RS06790 0.53 -0.6
1,256,054 + MMJJ_RS06790 0.53 -0.3
1,256,054 + MMJJ_RS06790 0.53 +1.2
1,256,087 - MMJJ_RS06790 0.56 +0.1
1,256,095 - MMJJ_RS06790 0.56 +0.3
1,256,125 - MMJJ_RS06790 0.59 +0.9
1,256,126 + MMJJ_RS06790 0.59 -0.7
1,256,140 - MMJJ_RS06790 0.61 +1.2
1,256,140 - MMJJ_RS06790 0.61 -0.4
1,256,141 + MMJJ_RS06790 0.61 +0.9
1,256,143 - -1.5
1,256,154 + MMJJ_RS06790 0.62 -0.0
1,256,154 + MMJJ_RS06790 0.62 +0.4
1,256,188 + MMJJ_RS06790 0.65 -0.1
1,256,203 - MMJJ_RS06790 0.67 -1.1
1,256,228 - MMJJ_RS06790 0.69 +0.2
1,256,229 + MMJJ_RS06790 0.69 +1.0
1,256,231 - MMJJ_RS06790 0.69 +0.6
1,256,283 + MMJJ_RS06790 0.74 -1.1
1,256,283 + MMJJ_RS06790 0.74 +0.6
1,256,283 + MMJJ_RS06790 0.74 -0.3
1,256,283 + MMJJ_RS06790 0.74 +0.4
1,256,287 + MMJJ_RS06790 0.75 +0.4
1,256,287 + MMJJ_RS06790 0.75 -0.8
1,256,327 + MMJJ_RS06790 0.79 +0.1
1,256,333 - MMJJ_RS06790 0.79 +1.1
1,256,333 - MMJJ_RS06790 0.79 -1.5
1,256,333 - MMJJ_RS06790 0.79 +0.3
1,256,334 + MMJJ_RS06790 0.79 +0.2
1,256,334 + MMJJ_RS06790 0.79 +0.6
1,256,334 + MMJJ_RS06790 0.79 -0.0
1,256,334 + MMJJ_RS06790 0.79 -1.2
1,256,334 + MMJJ_RS06790 0.79 -1.2
1,256,334 + MMJJ_RS06790 0.79 +0.2
1,256,334 + MMJJ_RS06790 0.79 -0.4
1,256,335 - MMJJ_RS06790 0.79 -0.5
1,256,335 - MMJJ_RS06790 0.79 -0.9
1,256,336 + MMJJ_RS06790 0.79 +0.4
1,256,370 - MMJJ_RS06790 0.83 +0.2
1,256,371 + MMJJ_RS06790 0.83 +0.4
1,256,371 + MMJJ_RS06790 0.83 +1.1
1,256,411 - MMJJ_RS06790 0.87 -0.1
1,256,412 + MMJJ_RS06790 0.87 +0.3
1,256,412 + MMJJ_RS06790 0.87 +0.5

Or see this region's nucleotide sequence