Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04730

Experiment: formate McAA nicotinic dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04720 and MMJJ_RS04725 are separated by 72 nucleotidesMMJJ_RS04725 and MMJJ_RS04730 are separated by 49 nucleotidesMMJJ_RS04730 and MMJJ_RS04735 are separated by 144 nucleotides MMJJ_RS04720: MMJJ_RS04720 - IMP dehydrogenase, at 884,673 to 886,175 _RS04720 MMJJ_RS04725: MMJJ_RS04725 - branched-chain-amino-acid transaminase, at 886,248 to 887,111 _RS04725 MMJJ_RS04730: MMJJ_RS04730 - tyrosine decarboxylase MfnA, at 887,161 to 888,315 _RS04730 MMJJ_RS04735: MMJJ_RS04735 - fumarate hydratase, at 888,460 to 889,305 _RS04735 Position (kb) 887 888 889Strain fitness (log2 ratio) -3 -2 -1 0 1at 886.173 kb on - strandat 886.187 kb on + strandat 886.194 kb on + strandat 886.246 kb on - strandat 886.247 kb on + strandat 886.247 kb on + strandat 886.249 kb on - strandat 886.249 kb on - strandat 886.254 kb on - strandat 886.254 kb on - strandat 886.255 kb on + strandat 886.255 kb on + strandat 886.255 kb on + strandat 886.258 kb on - strandat 886.259 kb on + strandat 886.259 kb on + strandat 886.281 kb on - strandat 886.282 kb on + strandat 886.282 kb on + strandat 886.295 kb on - strandat 886.302 kb on - strandat 886.302 kb on - strandat 886.302 kb on - strandat 886.303 kb on + strandat 886.323 kb on - strandat 886.338 kb on + strand, within MMJJ_RS04725at 886.338 kb on + strand, within MMJJ_RS04725at 886.372 kb on + strand, within MMJJ_RS04725at 886.395 kb on + strand, within MMJJ_RS04725at 886.417 kb on + strand, within MMJJ_RS04725at 886.443 kb on - strand, within MMJJ_RS04725at 886.446 kb on + strand, within MMJJ_RS04725at 886.451 kb on - strand, within MMJJ_RS04725at 886.451 kb on - strand, within MMJJ_RS04725at 886.452 kb on + strand, within MMJJ_RS04725at 886.476 kb on - strand, within MMJJ_RS04725at 886.477 kb on + strand, within MMJJ_RS04725at 886.494 kb on + strand, within MMJJ_RS04725at 886.557 kb on - strand, within MMJJ_RS04725at 886.557 kb on - strand, within MMJJ_RS04725at 886.557 kb on - strand, within MMJJ_RS04725at 886.557 kb on - strand, within MMJJ_RS04725at 886.627 kb on - strand, within MMJJ_RS04725at 886.659 kb on - strand, within MMJJ_RS04725at 886.660 kb on + strand, within MMJJ_RS04725at 886.660 kb on + strand, within MMJJ_RS04725at 886.689 kb on - strand, within MMJJ_RS04725at 886.698 kb on - strand, within MMJJ_RS04725at 886.699 kb on + strand, within MMJJ_RS04725at 886.704 kb on - strand, within MMJJ_RS04725at 886.726 kb on + strand, within MMJJ_RS04725at 886.726 kb on + strand, within MMJJ_RS04725at 886.728 kb on + strand, within MMJJ_RS04725at 886.728 kb on + strand, within MMJJ_RS04725at 886.838 kb on - strand, within MMJJ_RS04725at 886.838 kb on - strand, within MMJJ_RS04725at 886.838 kb on - strand, within MMJJ_RS04725at 886.842 kb on - strand, within MMJJ_RS04725at 886.842 kb on - strand, within MMJJ_RS04725at 886.843 kb on + strand, within MMJJ_RS04725at 886.843 kb on + strand, within MMJJ_RS04725at 886.843 kb on + strand, within MMJJ_RS04725at 886.851 kb on - strand, within MMJJ_RS04725at 886.851 kb on - strand, within MMJJ_RS04725at 886.851 kb on - strand, within MMJJ_RS04725at 886.855 kb on - strand, within MMJJ_RS04725at 886.855 kb on - strand, within MMJJ_RS04725at 886.855 kb on - strand, within MMJJ_RS04725at 886.855 kb on - strand, within MMJJ_RS04725at 886.855 kb on - strand, within MMJJ_RS04725at 886.856 kb on + strand, within MMJJ_RS04725at 886.866 kb on - strand, within MMJJ_RS04725at 886.867 kb on + strand, within MMJJ_RS04725at 886.970 kb on - strand, within MMJJ_RS04725at 887.138 kb on - strandat 887.139 kb on + strandat 887.147 kb on - strandat 887.147 kb on - strandat 887.148 kb on + strandat 887.156 kb on + strandat 887.337 kb on - strand, within MMJJ_RS04730at 887.697 kb on - strand, within MMJJ_RS04730at 887.716 kb on - strand, within MMJJ_RS04730at 887.755 kb on + strand, within MMJJ_RS04730at 887.830 kb on - strand, within MMJJ_RS04730at 887.878 kb on + strand, within MMJJ_RS04730at 888.006 kb on - strand, within MMJJ_RS04730at 888.258 kb on + strandat 888.355 kb on - strandat 888.355 kb on - strandat 888.355 kb on - strandat 888.366 kb on + strandat 888.396 kb on - strandat 888.397 kb on + strandat 888.442 kb on + strandat 888.442 kb on + strandat 888.469 kb on - strandat 888.507 kb on - strandat 888.511 kb on - strandat 888.782 kb on + strand, within MMJJ_RS04735at 889.051 kb on + strand, within MMJJ_RS04735

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA nicotinic dropout
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886,173 - -0.7
886,187 + +0.4
886,194 + -0.2
886,246 - +0.4
886,247 + +1.7
886,247 + -0.1
886,249 - -0.4
886,249 - +0.1
886,254 - +0.7
886,254 - -1.3
886,255 + +0.1
886,255 + -0.3
886,255 + +0.3
886,258 - +0.8
886,259 + +0.4
886,259 + -2.7
886,281 - +0.2
886,282 + +0.1
886,282 + -0.2
886,295 - +0.4
886,302 - +0.3
886,302 - -1.8
886,302 - +0.1
886,303 + +0.4
886,323 - +0.1
886,338 + MMJJ_RS04725 0.10 +0.9
886,338 + MMJJ_RS04725 0.10 +0.2
886,372 + MMJJ_RS04725 0.14 -1.0
886,395 + MMJJ_RS04725 0.17 +0.6
886,417 + MMJJ_RS04725 0.20 +0.2
886,443 - MMJJ_RS04725 0.23 +0.9
886,446 + MMJJ_RS04725 0.23 +0.1
886,451 - MMJJ_RS04725 0.23 -0.5
886,451 - MMJJ_RS04725 0.23 +0.9
886,452 + MMJJ_RS04725 0.24 +0.0
886,476 - MMJJ_RS04725 0.26 -0.8
886,477 + MMJJ_RS04725 0.27 +0.1
886,494 + MMJJ_RS04725 0.28 -0.3
886,557 - MMJJ_RS04725 0.36 +0.0
886,557 - MMJJ_RS04725 0.36 +0.7
886,557 - MMJJ_RS04725 0.36 -0.5
886,557 - MMJJ_RS04725 0.36 +0.5
886,627 - MMJJ_RS04725 0.44 +0.2
886,659 - MMJJ_RS04725 0.48 -0.5
886,660 + MMJJ_RS04725 0.48 -0.5
886,660 + MMJJ_RS04725 0.48 -0.2
886,689 - MMJJ_RS04725 0.51 +0.2
886,698 - MMJJ_RS04725 0.52 -0.1
886,699 + MMJJ_RS04725 0.52 +0.2
886,704 - MMJJ_RS04725 0.53 +0.2
886,726 + MMJJ_RS04725 0.55 -2.0
886,726 + MMJJ_RS04725 0.55 -0.6
886,728 + MMJJ_RS04725 0.56 -1.2
886,728 + MMJJ_RS04725 0.56 -0.1
886,838 - MMJJ_RS04725 0.68 -0.4
886,838 - MMJJ_RS04725 0.68 +1.4
886,838 - MMJJ_RS04725 0.68 +0.3
886,842 - MMJJ_RS04725 0.69 +0.2
886,842 - MMJJ_RS04725 0.69 +0.8
886,843 + MMJJ_RS04725 0.69 +0.1
886,843 + MMJJ_RS04725 0.69 -0.1
886,843 + MMJJ_RS04725 0.69 -0.2
886,851 - MMJJ_RS04725 0.70 +0.2
886,851 - MMJJ_RS04725 0.70 +0.2
886,851 - MMJJ_RS04725 0.70 -0.4
886,855 - MMJJ_RS04725 0.70 +0.5
886,855 - MMJJ_RS04725 0.70 +0.1
886,855 - MMJJ_RS04725 0.70 +1.2
886,855 - MMJJ_RS04725 0.70 -0.9
886,855 - MMJJ_RS04725 0.70 -0.2
886,856 + MMJJ_RS04725 0.70 -0.1
886,866 - MMJJ_RS04725 0.72 +0.3
886,867 + MMJJ_RS04725 0.72 -0.9
886,970 - MMJJ_RS04725 0.84 +0.7
887,138 - +0.6
887,139 + +0.2
887,147 - +0.2
887,147 - -0.2
887,148 + -1.2
887,156 + -0.7
887,337 - MMJJ_RS04730 0.15 -1.5
887,697 - MMJJ_RS04730 0.46 -2.1
887,716 - MMJJ_RS04730 0.48 -1.2
887,755 + MMJJ_RS04730 0.51 -2.9
887,830 - MMJJ_RS04730 0.58 -2.9
887,878 + MMJJ_RS04730 0.62 -1.7
888,006 - MMJJ_RS04730 0.73 -2.0
888,258 + -1.2
888,355 - -0.3
888,355 - -0.2
888,355 - -1.7
888,366 + -0.6
888,396 - +0.7
888,397 + -0.8
888,442 + +0.1
888,442 + -0.1
888,469 - -0.2
888,507 - -3.2
888,511 - -1.2
888,782 + MMJJ_RS04735 0.38 +0.2
889,051 + MMJJ_RS04735 0.70 -1.1

Or see this region's nucleotide sequence