Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03580

Experiment: formate McAA nicotinic dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03565 and MMJJ_RS03570 are separated by 27 nucleotidesMMJJ_RS03570 and MMJJ_RS03575 are separated by 110 nucleotidesMMJJ_RS03575 and MMJJ_RS03580 are separated by 120 nucleotidesMMJJ_RS03580 and MMJJ_RS03585 are separated by 29 nucleotidesMMJJ_RS03585 and MMJJ_RS03590 are separated by 16 nucleotidesMMJJ_RS03590 and MMJJ_RS03595 are separated by 47 nucleotides MMJJ_RS03565: MMJJ_RS03565 - tRNA-Glu, at 667,897 to 667,971 _RS03565 MMJJ_RS03570: MMJJ_RS03570 - tRNA-Arg, at 667,999 to 668,076 _RS03570 MMJJ_RS03575: MMJJ_RS03575 - NUDIX hydrolase, at 668,187 to 668,702 _RS03575 MMJJ_RS03580: MMJJ_RS03580 - TIGR00303 family protein, at 668,823 to 669,875 _RS03580 MMJJ_RS03585: MMJJ_RS03585 - methanogenesis marker 6 protein, at 669,905 to 670,351 _RS03585 MMJJ_RS03590: MMJJ_RS03590 - restriction endonuclease, at 670,368 to 670,775 _RS03590 MMJJ_RS03595: MMJJ_RS03595 - hypothetical protein, at 670,823 to 671,236 _RS03595 Position (kb) 668 669 670Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 667.841 kb on - strandat 667.841 kb on - strandat 667.842 kb on + strandat 667.842 kb on + strandat 667.980 kb on + strandat 668.149 kb on + strandat 668.165 kb on - strandat 668.166 kb on + strandat 668.166 kb on + strandat 668.173 kb on + strandat 668.174 kb on - strandat 668.179 kb on - strandat 668.179 kb on - strandat 668.181 kb on - strandat 668.182 kb on + strandat 668.182 kb on + strandat 668.182 kb on + strandat 668.196 kb on - strandat 668.196 kb on - strandat 668.197 kb on + strandat 668.197 kb on + strandat 668.198 kb on - strandat 668.198 kb on - strandat 668.198 kb on - strandat 668.199 kb on + strandat 668.199 kb on + strandat 668.199 kb on + strandat 668.199 kb on + strandat 668.199 kb on + strandat 668.199 kb on + strandat 668.199 kb on + strandat 668.199 kb on + strandat 668.201 kb on + strandat 668.217 kb on - strandat 668.218 kb on + strandat 668.256 kb on - strand, within MMJJ_RS03575at 668.270 kb on - strand, within MMJJ_RS03575at 668.270 kb on - strand, within MMJJ_RS03575at 668.274 kb on - strand, within MMJJ_RS03575at 668.274 kb on - strand, within MMJJ_RS03575at 668.274 kb on - strand, within MMJJ_RS03575at 668.274 kb on - strand, within MMJJ_RS03575at 668.307 kb on - strand, within MMJJ_RS03575at 668.348 kb on - strand, within MMJJ_RS03575at 668.390 kb on - strand, within MMJJ_RS03575at 668.409 kb on + strand, within MMJJ_RS03575at 668.487 kb on - strand, within MMJJ_RS03575at 668.548 kb on - strand, within MMJJ_RS03575at 668.549 kb on + strand, within MMJJ_RS03575at 668.552 kb on - strand, within MMJJ_RS03575at 668.571 kb on - strand, within MMJJ_RS03575at 668.572 kb on + strand, within MMJJ_RS03575at 668.649 kb on - strand, within MMJJ_RS03575at 668.688 kb on - strandat 668.689 kb on + strandat 668.693 kb on - strandat 668.693 kb on - strandat 668.693 kb on - strandat 668.702 kb on - strandat 668.741 kb on - strandat 668.742 kb on + strandat 668.746 kb on - strandat 668.764 kb on + strandat 668.764 kb on + strandat 668.775 kb on - strandat 668.775 kb on - strandat 668.776 kb on + strandat 668.776 kb on + strandat 668.780 kb on - strandat 668.781 kb on + strandat 668.781 kb on + strandat 668.781 kb on + strandat 668.794 kb on - strandat 668.794 kb on - strandat 668.794 kb on - strandat 668.794 kb on - strandat 668.795 kb on + strandat 668.795 kb on + strandat 668.796 kb on - strandat 668.797 kb on + strandat 668.797 kb on + strandat 668.797 kb on + strandat 668.797 kb on + strandat 668.799 kb on - strandat 668.799 kb on - strandat 668.800 kb on + strandat 668.800 kb on + strandat 668.800 kb on + strandat 668.800 kb on + strandat 668.803 kb on - strandat 668.803 kb on - strandat 668.810 kb on + strandat 668.858 kb on + strandat 668.898 kb on + strandat 668.922 kb on - strandat 668.922 kb on - strandat 668.922 kb on - strandat 668.923 kb on + strandat 668.995 kb on - strand, within MMJJ_RS03580at 669.239 kb on - strand, within MMJJ_RS03580at 669.245 kb on - strand, within MMJJ_RS03580at 669.255 kb on + strand, within MMJJ_RS03580at 669.260 kb on + strand, within MMJJ_RS03580at 669.263 kb on + strand, within MMJJ_RS03580at 669.339 kb on + strand, within MMJJ_RS03580at 669.736 kb on + strand, within MMJJ_RS03580at 669.829 kb on + strandat 669.850 kb on - strandat 669.851 kb on + strandat 669.968 kb on - strand, within MMJJ_RS03585at 670.291 kb on - strand, within MMJJ_RS03585at 670.336 kb on + strandat 670.336 kb on + strandat 670.336 kb on + strandat 670.349 kb on - strandat 670.350 kb on + strandat 670.376 kb on - strandat 670.377 kb on + strandat 670.381 kb on + strandat 670.394 kb on - strandat 670.394 kb on - strandat 670.477 kb on - strand, within MMJJ_RS03590at 670.508 kb on - strand, within MMJJ_RS03590at 670.545 kb on - strand, within MMJJ_RS03590at 670.546 kb on + strand, within MMJJ_RS03590at 670.626 kb on + strand, within MMJJ_RS03590at 670.639 kb on - strand, within MMJJ_RS03590at 670.639 kb on - strand, within MMJJ_RS03590at 670.644 kb on + strand, within MMJJ_RS03590at 670.645 kb on - strand, within MMJJ_RS03590at 670.646 kb on + strand, within MMJJ_RS03590at 670.745 kb on - strandat 670.773 kb on - strandat 670.773 kb on - strandat 670.774 kb on + strandat 670.776 kb on - strandat 670.776 kb on - strandat 670.776 kb on - strandat 670.776 kb on - strandat 670.777 kb on + strandat 670.778 kb on - strandat 670.778 kb on - strandat 670.778 kb on - strandat 670.779 kb on + strandat 670.779 kb on + strandat 670.792 kb on + strandat 670.839 kb on + strandat 670.866 kb on + strand, within MMJJ_RS03595at 670.866 kb on + strand, within MMJJ_RS03595at 670.869 kb on - strand, within MMJJ_RS03595at 670.869 kb on - strand, within MMJJ_RS03595at 670.869 kb on - strand, within MMJJ_RS03595at 670.870 kb on + strand, within MMJJ_RS03595at 670.870 kb on + strand, within MMJJ_RS03595

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA nicotinic dropout
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667,841 - +1.0
667,841 - -1.1
667,842 + +1.1
667,842 + -1.5
667,980 + +1.2
668,149 + +0.3
668,165 - -1.0
668,166 + -0.2
668,166 + +0.3
668,173 + +1.4
668,174 - +1.3
668,179 - +1.0
668,179 - -0.6
668,181 - +0.3
668,182 + -0.3
668,182 + +0.8
668,182 + +0.4
668,196 - +0.1
668,196 - -0.5
668,197 + +0.3
668,197 + -0.3
668,198 - -0.3
668,198 - -0.7
668,198 - +0.4
668,199 + +0.1
668,199 + +0.2
668,199 + +1.2
668,199 + +0.4
668,199 + +0.5
668,199 + -0.2
668,199 + +0.4
668,199 + +0.8
668,201 + +0.3
668,217 - +0.9
668,218 + -0.2
668,256 - MMJJ_RS03575 0.13 -0.0
668,270 - MMJJ_RS03575 0.16 +0.2
668,270 - MMJJ_RS03575 0.16 -0.1
668,274 - MMJJ_RS03575 0.17 -0.4
668,274 - MMJJ_RS03575 0.17 +0.4
668,274 - MMJJ_RS03575 0.17 +0.2
668,274 - MMJJ_RS03575 0.17 -0.6
668,307 - MMJJ_RS03575 0.23 +0.7
668,348 - MMJJ_RS03575 0.31 +0.0
668,390 - MMJJ_RS03575 0.39 +0.4
668,409 + MMJJ_RS03575 0.43 +0.4
668,487 - MMJJ_RS03575 0.58 +0.8
668,548 - MMJJ_RS03575 0.70 +2.1
668,549 + MMJJ_RS03575 0.70 -0.1
668,552 - MMJJ_RS03575 0.71 +0.9
668,571 - MMJJ_RS03575 0.74 -0.7
668,572 + MMJJ_RS03575 0.75 +0.1
668,649 - MMJJ_RS03575 0.90 +0.2
668,688 - -1.2
668,689 + -0.2
668,693 - +0.3
668,693 - +0.8
668,693 - -0.2
668,702 - +0.1
668,741 - -0.1
668,742 + +0.0
668,746 - +0.4
668,764 + -0.5
668,764 + -0.2
668,775 - -0.1
668,775 - -0.4
668,776 + -0.1
668,776 + -0.0
668,780 - +0.7
668,781 + -0.0
668,781 + +0.6
668,781 + -0.4
668,794 - +0.6
668,794 - +0.1
668,794 - +0.4
668,794 - +0.7
668,795 + -0.3
668,795 + -0.3
668,796 - +0.0
668,797 + -0.4
668,797 + -0.8
668,797 + +0.2
668,797 + +0.0
668,799 - +0.5
668,799 - -0.7
668,800 + -0.3
668,800 + +0.3
668,800 + +0.2
668,800 + +0.1
668,803 - -0.4
668,803 - -0.7
668,810 + -0.7
668,858 + -2.3
668,898 + -2.0
668,922 - -3.0
668,922 - -2.5
668,922 - -2.4
668,923 + -3.0
668,995 - MMJJ_RS03580 0.16 -3.0
669,239 - MMJJ_RS03580 0.40 -2.8
669,245 - MMJJ_RS03580 0.40 -2.4
669,255 + MMJJ_RS03580 0.41 -2.0
669,260 + MMJJ_RS03580 0.42 -3.7
669,263 + MMJJ_RS03580 0.42 -1.5
669,339 + MMJJ_RS03580 0.49 -1.8
669,736 + MMJJ_RS03580 0.87 -1.2
669,829 + -0.2
669,850 - -1.1
669,851 + -0.2
669,968 - MMJJ_RS03585 0.14 -2.5
670,291 - MMJJ_RS03585 0.86 +0.5
670,336 + -0.4
670,336 + +0.3
670,336 + +0.5
670,349 - -2.8
670,350 + -0.0
670,376 - +1.0
670,377 + -0.3
670,381 + +0.6
670,394 - -1.3
670,394 - -0.6
670,477 - MMJJ_RS03590 0.27 +0.2
670,508 - MMJJ_RS03590 0.34 +0.5
670,545 - MMJJ_RS03590 0.43 +0.0
670,546 + MMJJ_RS03590 0.44 -0.1
670,626 + MMJJ_RS03590 0.63 +0.1
670,639 - MMJJ_RS03590 0.66 -0.6
670,639 - MMJJ_RS03590 0.66 +0.8
670,644 + MMJJ_RS03590 0.68 -1.2
670,645 - MMJJ_RS03590 0.68 -0.2
670,646 + MMJJ_RS03590 0.68 -1.6
670,745 - -0.8
670,773 - +0.2
670,773 - -0.1
670,774 + +0.3
670,776 - -0.1
670,776 - +0.6
670,776 - +0.4
670,776 - +0.3
670,777 + +0.5
670,778 - +0.5
670,778 - +0.5
670,778 - -0.3
670,779 + +1.2
670,779 + -0.2
670,792 + +0.1
670,839 + -0.2
670,866 + MMJJ_RS03595 0.10 -1.5
670,866 + MMJJ_RS03595 0.10 +0.6
670,869 - MMJJ_RS03595 0.11 -0.7
670,869 - MMJJ_RS03595 0.11 +0.3
670,869 - MMJJ_RS03595 0.11 -0.9
670,870 + MMJJ_RS03595 0.11 +1.5
670,870 + MMJJ_RS03595 0.11 -0.6

Or see this region's nucleotide sequence