Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01810

Experiment: formate McAA nicotinic dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01800 and MMJJ_RS01805 are separated by 46 nucleotidesMMJJ_RS01805 and MMJJ_RS01810 are separated by 19 nucleotidesMMJJ_RS01810 and MMJJ_RS01815 are separated by 22 nucleotidesMMJJ_RS01815 and MMJJ_RS01820 are separated by 10 nucleotidesMMJJ_RS01820 and MMJJ_RS01825 are separated by 105 nucleotides MMJJ_RS01800: MMJJ_RS01800 - ADP-ribosylglycohydrolase family protein, at 345,524 to 346,432 _RS01800 MMJJ_RS01805: MMJJ_RS01805 - sugar phosphate isomerase/epimerase, at 346,479 to 347,288 _RS01805 MMJJ_RS01810: MMJJ_RS01810 - methyl coenzyme M reductase system, component A2, at 347,308 to 348,903 _RS01810 MMJJ_RS01815: MMJJ_RS01815 - DUF134 domain-containing protein, at 348,926 to 349,321 _RS01815 MMJJ_RS01820: MMJJ_RS01820 - MJ1244 family protein, at 349,332 to 349,661 _RS01820 MMJJ_RS01825: MMJJ_RS01825 - DNA repair and recombination protein RadB, at 349,767 to 350,417 _RS01825 Position (kb) 347 348 349Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 346.317 kb on + strand, within MMJJ_RS01800at 346.451 kb on - strandat 346.451 kb on - strandat 346.451 kb on - strandat 346.451 kb on - strandat 346.452 kb on + strandat 346.453 kb on - strandat 346.467 kb on - strandat 346.468 kb on + strandat 346.470 kb on + strandat 346.489 kb on - strandat 346.519 kb on + strandat 346.538 kb on + strandat 346.538 kb on + strandat 346.538 kb on + strandat 346.541 kb on - strandat 346.541 kb on - strandat 346.542 kb on + strandat 346.542 kb on + strandat 346.543 kb on - strandat 346.543 kb on - strandat 346.543 kb on - strandat 346.544 kb on + strandat 346.544 kb on + strandat 346.544 kb on + strandat 346.544 kb on + strandat 346.562 kb on + strandat 346.618 kb on - strand, within MMJJ_RS01805at 346.619 kb on + strand, within MMJJ_RS01805at 346.619 kb on + strand, within MMJJ_RS01805at 346.623 kb on - strand, within MMJJ_RS01805at 346.624 kb on + strand, within MMJJ_RS01805at 346.624 kb on + strand, within MMJJ_RS01805at 346.625 kb on - strand, within MMJJ_RS01805at 346.625 kb on - strand, within MMJJ_RS01805at 346.626 kb on + strand, within MMJJ_RS01805at 346.626 kb on + strand, within MMJJ_RS01805at 346.627 kb on - strand, within MMJJ_RS01805at 346.628 kb on + strand, within MMJJ_RS01805at 346.628 kb on + strand, within MMJJ_RS01805at 346.628 kb on + strand, within MMJJ_RS01805at 346.663 kb on - strand, within MMJJ_RS01805at 346.663 kb on - strand, within MMJJ_RS01805at 346.663 kb on - strand, within MMJJ_RS01805at 346.663 kb on - strand, within MMJJ_RS01805at 346.663 kb on - strand, within MMJJ_RS01805at 346.664 kb on + strand, within MMJJ_RS01805at 346.680 kb on - strand, within MMJJ_RS01805at 346.680 kb on - strand, within MMJJ_RS01805at 346.680 kb on - strand, within MMJJ_RS01805at 346.680 kb on - strand, within MMJJ_RS01805at 346.682 kb on - strand, within MMJJ_RS01805at 346.715 kb on - strand, within MMJJ_RS01805at 346.733 kb on + strand, within MMJJ_RS01805at 346.792 kb on - strand, within MMJJ_RS01805at 346.792 kb on - strand, within MMJJ_RS01805at 346.793 kb on + strand, within MMJJ_RS01805at 346.897 kb on - strand, within MMJJ_RS01805at 346.937 kb on - strand, within MMJJ_RS01805at 346.938 kb on + strand, within MMJJ_RS01805at 346.992 kb on - strand, within MMJJ_RS01805at 346.993 kb on + strand, within MMJJ_RS01805at 347.070 kb on + strand, within MMJJ_RS01805at 347.075 kb on - strand, within MMJJ_RS01805at 347.075 kb on - strand, within MMJJ_RS01805at 347.076 kb on + strand, within MMJJ_RS01805at 347.125 kb on - strand, within MMJJ_RS01805at 347.126 kb on + strand, within MMJJ_RS01805at 347.165 kb on - strand, within MMJJ_RS01805at 347.166 kb on + strand, within MMJJ_RS01805at 347.194 kb on - strand, within MMJJ_RS01805at 347.203 kb on - strand, within MMJJ_RS01805at 347.204 kb on + strand, within MMJJ_RS01805at 347.207 kb on + strand, within MMJJ_RS01805at 347.247 kb on + strandat 347.265 kb on - strandat 347.266 kb on + strandat 347.278 kb on - strandat 347.454 kb on - strandat 347.459 kb on - strandat 347.681 kb on + strand, within MMJJ_RS01810at 348.011 kb on + strand, within MMJJ_RS01810at 348.036 kb on + strand, within MMJJ_RS01810at 348.850 kb on - strandat 349.022 kb on - strand, within MMJJ_RS01815at 349.027 kb on - strand, within MMJJ_RS01815at 349.046 kb on + strand, within MMJJ_RS01815at 349.065 kb on + strand, within MMJJ_RS01815at 349.211 kb on - strand, within MMJJ_RS01815at 349.252 kb on - strand, within MMJJ_RS01815at 349.256 kb on - strand, within MMJJ_RS01815at 349.333 kb on - strandat 349.333 kb on - strandat 349.382 kb on - strand, within MMJJ_RS01820at 349.382 kb on - strand, within MMJJ_RS01820at 349.382 kb on - strand, within MMJJ_RS01820at 349.382 kb on - strand, within MMJJ_RS01820at 349.383 kb on + strand, within MMJJ_RS01820at 349.383 kb on + strand, within MMJJ_RS01820at 349.383 kb on + strand, within MMJJ_RS01820at 349.383 kb on + strand, within MMJJ_RS01820at 349.480 kb on + strand, within MMJJ_RS01820at 349.677 kb on - strandat 349.677 kb on - strandat 349.677 kb on - strandat 349.696 kb on - strandat 349.696 kb on - strandat 349.696 kb on - strandat 349.712 kb on - strandat 349.714 kb on - strandat 349.714 kb on - strandat 349.714 kb on - strandat 349.714 kb on - strandat 349.715 kb on + strandat 349.715 kb on + strandat 349.715 kb on + strandat 349.715 kb on + strandat 349.715 kb on + strandat 349.716 kb on - strandat 349.718 kb on - strandat 349.719 kb on + strandat 349.751 kb on + strandat 349.781 kb on - strandat 349.809 kb on - strandat 349.863 kb on + strand, within MMJJ_RS01825at 349.863 kb on + strand, within MMJJ_RS01825

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA nicotinic dropout
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346,317 + MMJJ_RS01800 0.87 +1.0
346,451 - +0.9
346,451 - -0.1
346,451 - -1.2
346,451 - +0.7
346,452 + -1.0
346,453 - -0.5
346,467 - -0.7
346,468 + -0.4
346,470 + -0.0
346,489 - -0.0
346,519 + -0.2
346,538 + -1.1
346,538 + -0.0
346,538 + -1.1
346,541 - +0.2
346,541 - +0.2
346,542 + +0.3
346,542 + +0.4
346,543 - -0.1
346,543 - +0.8
346,543 - +1.1
346,544 + +0.4
346,544 + +0.8
346,544 + +0.7
346,544 + -0.4
346,562 + -1.1
346,618 - MMJJ_RS01805 0.17 -0.6
346,619 + MMJJ_RS01805 0.17 -1.1
346,619 + MMJJ_RS01805 0.17 +0.7
346,623 - MMJJ_RS01805 0.18 -0.5
346,624 + MMJJ_RS01805 0.18 +1.1
346,624 + MMJJ_RS01805 0.18 -0.0
346,625 - MMJJ_RS01805 0.18 -1.1
346,625 - MMJJ_RS01805 0.18 +0.8
346,626 + MMJJ_RS01805 0.18 -0.2
346,626 + MMJJ_RS01805 0.18 -0.8
346,627 - MMJJ_RS01805 0.18 +0.2
346,628 + MMJJ_RS01805 0.18 -0.1
346,628 + MMJJ_RS01805 0.18 -0.1
346,628 + MMJJ_RS01805 0.18 -0.3
346,663 - MMJJ_RS01805 0.23 +0.3
346,663 - MMJJ_RS01805 0.23 +1.4
346,663 - MMJJ_RS01805 0.23 +0.8
346,663 - MMJJ_RS01805 0.23 +0.4
346,663 - MMJJ_RS01805 0.23 +0.5
346,664 + MMJJ_RS01805 0.23 +0.4
346,680 - MMJJ_RS01805 0.25 +0.2
346,680 - MMJJ_RS01805 0.25 -0.7
346,680 - MMJJ_RS01805 0.25 +0.5
346,680 - MMJJ_RS01805 0.25 +0.1
346,682 - MMJJ_RS01805 0.25 +0.5
346,715 - MMJJ_RS01805 0.29 -0.9
346,733 + MMJJ_RS01805 0.31 -0.5
346,792 - MMJJ_RS01805 0.39 +0.4
346,792 - MMJJ_RS01805 0.39 +0.2
346,793 + MMJJ_RS01805 0.39 +0.5
346,897 - MMJJ_RS01805 0.52 -0.3
346,937 - MMJJ_RS01805 0.57 -0.2
346,938 + MMJJ_RS01805 0.57 +1.0
346,992 - MMJJ_RS01805 0.63 -0.5
346,993 + MMJJ_RS01805 0.63 -0.2
347,070 + MMJJ_RS01805 0.73 -0.8
347,075 - MMJJ_RS01805 0.74 +0.0
347,075 - MMJJ_RS01805 0.74 -0.6
347,076 + MMJJ_RS01805 0.74 -0.6
347,125 - MMJJ_RS01805 0.80 +0.1
347,126 + MMJJ_RS01805 0.80 -0.5
347,165 - MMJJ_RS01805 0.85 +1.4
347,166 + MMJJ_RS01805 0.85 +0.1
347,194 - MMJJ_RS01805 0.88 -0.8
347,203 - MMJJ_RS01805 0.89 -1.5
347,204 + MMJJ_RS01805 0.90 -0.0
347,207 + MMJJ_RS01805 0.90 +0.2
347,247 + +1.0
347,265 - +0.0
347,266 + +0.4
347,278 - -0.4
347,454 - +0.9
347,459 - -1.1
347,681 + MMJJ_RS01810 0.23 -1.0
348,011 + MMJJ_RS01810 0.44 -4.0
348,036 + MMJJ_RS01810 0.46 -3.5
348,850 - -1.7
349,022 - MMJJ_RS01815 0.24 -0.5
349,027 - MMJJ_RS01815 0.26 -2.1
349,046 + MMJJ_RS01815 0.30 -0.2
349,065 + MMJJ_RS01815 0.35 -2.3
349,211 - MMJJ_RS01815 0.72 +0.1
349,252 - MMJJ_RS01815 0.82 -2.6
349,256 - MMJJ_RS01815 0.83 -1.6
349,333 - -0.1
349,333 - -1.5
349,382 - MMJJ_RS01820 0.15 -1.1
349,382 - MMJJ_RS01820 0.15 -0.7
349,382 - MMJJ_RS01820 0.15 -1.1
349,382 - MMJJ_RS01820 0.15 -1.1
349,383 + MMJJ_RS01820 0.15 -0.5
349,383 + MMJJ_RS01820 0.15 -2.2
349,383 + MMJJ_RS01820 0.15 -0.5
349,383 + MMJJ_RS01820 0.15 -1.2
349,480 + MMJJ_RS01820 0.45 -2.1
349,677 - +0.9
349,677 - -0.4
349,677 - -0.5
349,696 - -1.5
349,696 - -0.9
349,696 - -0.1
349,712 - -0.9
349,714 - -0.4
349,714 - -0.8
349,714 - -1.1
349,714 - -1.2
349,715 + -1.3
349,715 + -1.5
349,715 + -0.5
349,715 + -1.7
349,715 + -1.8
349,716 - +0.7
349,718 - +0.1
349,719 + +0.7
349,751 + -0.3
349,781 - +0.6
349,809 - +1.2
349,863 + MMJJ_RS01825 0.15 -0.6
349,863 + MMJJ_RS01825 0.15 -0.3

Or see this region's nucleotide sequence