Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00875

Experiment: formate McAA nicotinic dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00865 and MMJJ_RS00870 are separated by 21 nucleotidesMMJJ_RS00870 and MMJJ_RS00875 are separated by 16 nucleotidesMMJJ_RS00875 and MMJJ_RS00880 are separated by 358 nucleotides MMJJ_RS00865: MMJJ_RS00865 - Ni/Fe hydrogenase subunit alpha, at 165,676 to 167,091 _RS00865 MMJJ_RS00870: MMJJ_RS00870 - F420-nonreducing hydrogenase, at 167,113 to 168,015 _RS00870 MMJJ_RS00875: MMJJ_RS00875 - hydrogenase iron-sulfur subunit, at 168,032 to 168,454 _RS00875 MMJJ_RS00880: MMJJ_RS00880 - coenzyme F420 hydrogenase subunit alpha, at 168,813 to 170,045 _RS00880 Position (kb) 168 169Strain fitness (log2 ratio) -2 -1 0 1 2at 167.092 kb on - strandat 167.102 kb on - strandat 167.293 kb on + strand, within MMJJ_RS00870at 167.311 kb on + strand, within MMJJ_RS00870at 167.335 kb on - strand, within MMJJ_RS00870at 167.496 kb on - strand, within MMJJ_RS00870at 167.535 kb on - strand, within MMJJ_RS00870at 167.535 kb on - strand, within MMJJ_RS00870at 167.536 kb on + strand, within MMJJ_RS00870at 167.536 kb on + strand, within MMJJ_RS00870at 167.540 kb on + strand, within MMJJ_RS00870at 167.540 kb on + strand, within MMJJ_RS00870at 167.540 kb on + strand, within MMJJ_RS00870at 167.583 kb on - strand, within MMJJ_RS00870at 167.583 kb on - strand, within MMJJ_RS00870at 167.655 kb on - strand, within MMJJ_RS00870at 167.693 kb on - strand, within MMJJ_RS00870at 167.725 kb on - strand, within MMJJ_RS00870at 167.726 kb on + strand, within MMJJ_RS00870at 167.731 kb on + strand, within MMJJ_RS00870at 167.866 kb on + strand, within MMJJ_RS00870at 167.950 kb on - strandat 167.950 kb on - strandat 167.965 kb on - strandat 168.001 kb on + strandat 168.001 kb on + strandat 168.001 kb on + strandat 168.001 kb on + strandat 168.010 kb on - strandat 168.015 kb on - strandat 168.015 kb on - strandat 168.029 kb on - strandat 168.029 kb on - strandat 168.030 kb on + strandat 168.232 kb on + strand, within MMJJ_RS00875at 168.262 kb on - strand, within MMJJ_RS00875at 168.301 kb on - strand, within MMJJ_RS00875at 168.302 kb on + strand, within MMJJ_RS00875at 168.302 kb on + strand, within MMJJ_RS00875at 168.339 kb on + strand, within MMJJ_RS00875at 168.339 kb on + strand, within MMJJ_RS00875at 168.341 kb on - strand, within MMJJ_RS00875at 168.342 kb on + strand, within MMJJ_RS00875at 168.342 kb on + strand, within MMJJ_RS00875at 168.348 kb on + strand, within MMJJ_RS00875at 168.371 kb on + strand, within MMJJ_RS00875at 168.386 kb on + strand, within MMJJ_RS00875at 168.399 kb on - strand, within MMJJ_RS00875at 168.399 kb on - strand, within MMJJ_RS00875at 168.399 kb on - strand, within MMJJ_RS00875at 168.400 kb on + strand, within MMJJ_RS00875at 168.400 kb on + strand, within MMJJ_RS00875at 168.400 kb on + strand, within MMJJ_RS00875at 168.400 kb on + strand, within MMJJ_RS00875at 168.403 kb on - strand, within MMJJ_RS00875at 168.404 kb on + strand, within MMJJ_RS00875at 168.705 kb on - strandat 168.706 kb on + strandat 168.706 kb on + strandat 168.708 kb on + strandat 168.803 kb on + strandat 168.832 kb on - strandat 168.840 kb on + strandat 168.908 kb on - strandat 168.909 kb on + strandat 168.912 kb on - strandat 168.912 kb on - strandat 168.912 kb on - strandat 168.913 kb on + strandat 168.932 kb on - strandat 169.026 kb on + strand, within MMJJ_RS00880at 169.036 kb on - strand, within MMJJ_RS00880at 169.065 kb on + strand, within MMJJ_RS00880at 169.189 kb on + strand, within MMJJ_RS00880at 169.189 kb on + strand, within MMJJ_RS00880at 169.193 kb on + strand, within MMJJ_RS00880at 169.227 kb on - strand, within MMJJ_RS00880at 169.238 kb on - strand, within MMJJ_RS00880at 169.239 kb on + strand, within MMJJ_RS00880at 169.243 kb on - strand, within MMJJ_RS00880at 169.243 kb on - strand, within MMJJ_RS00880at 169.243 kb on - strand, within MMJJ_RS00880at 169.244 kb on + strand, within MMJJ_RS00880at 169.244 kb on + strand, within MMJJ_RS00880at 169.244 kb on + strand, within MMJJ_RS00880at 169.287 kb on + strand, within MMJJ_RS00880at 169.325 kb on + strand, within MMJJ_RS00880at 169.329 kb on - strand, within MMJJ_RS00880at 169.345 kb on + strand, within MMJJ_RS00880at 169.397 kb on - strand, within MMJJ_RS00880at 169.398 kb on - strand, within MMJJ_RS00880at 169.400 kb on - strand, within MMJJ_RS00880at 169.401 kb on + strand, within MMJJ_RS00880at 169.401 kb on + strand, within MMJJ_RS00880at 169.435 kb on - strand, within MMJJ_RS00880

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA nicotinic dropout
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167,092 - +0.0
167,102 - +0.3
167,293 + MMJJ_RS00870 0.20 +1.1
167,311 + MMJJ_RS00870 0.22 -0.5
167,335 - MMJJ_RS00870 0.25 +1.2
167,496 - MMJJ_RS00870 0.42 -0.0
167,535 - MMJJ_RS00870 0.47 -0.4
167,535 - MMJJ_RS00870 0.47 -0.6
167,536 + MMJJ_RS00870 0.47 +0.3
167,536 + MMJJ_RS00870 0.47 -0.1
167,540 + MMJJ_RS00870 0.47 -0.0
167,540 + MMJJ_RS00870 0.47 +0.4
167,540 + MMJJ_RS00870 0.47 -0.4
167,583 - MMJJ_RS00870 0.52 -0.1
167,583 - MMJJ_RS00870 0.52 -0.4
167,655 - MMJJ_RS00870 0.60 +0.4
167,693 - MMJJ_RS00870 0.64 +0.4
167,725 - MMJJ_RS00870 0.68 +0.1
167,726 + MMJJ_RS00870 0.68 -0.4
167,731 + MMJJ_RS00870 0.68 +2.1
167,866 + MMJJ_RS00870 0.83 -0.5
167,950 - +0.3
167,950 - -0.5
167,965 - +1.3
168,001 + +1.3
168,001 + +0.2
168,001 + +2.6
168,001 + +0.5
168,010 - -0.1
168,015 - -0.3
168,015 - -1.9
168,029 - -0.1
168,029 - +0.5
168,030 + +0.8
168,232 + MMJJ_RS00875 0.47 +0.6
168,262 - MMJJ_RS00875 0.54 -0.4
168,301 - MMJJ_RS00875 0.64 +0.2
168,302 + MMJJ_RS00875 0.64 -2.1
168,302 + MMJJ_RS00875 0.64 +0.2
168,339 + MMJJ_RS00875 0.73 -0.3
168,339 + MMJJ_RS00875 0.73 +0.4
168,341 - MMJJ_RS00875 0.73 +0.2
168,342 + MMJJ_RS00875 0.73 -0.3
168,342 + MMJJ_RS00875 0.73 +1.5
168,348 + MMJJ_RS00875 0.75 +1.4
168,371 + MMJJ_RS00875 0.80 -0.2
168,386 + MMJJ_RS00875 0.84 +0.9
168,399 - MMJJ_RS00875 0.87 +0.0
168,399 - MMJJ_RS00875 0.87 -0.8
168,399 - MMJJ_RS00875 0.87 +1.7
168,400 + MMJJ_RS00875 0.87 +0.6
168,400 + MMJJ_RS00875 0.87 -0.4
168,400 + MMJJ_RS00875 0.87 -0.5
168,400 + MMJJ_RS00875 0.87 +0.9
168,403 - MMJJ_RS00875 0.88 -0.2
168,404 + MMJJ_RS00875 0.88 +0.1
168,705 - -0.4
168,706 + -0.7
168,706 + +0.8
168,708 + +0.9
168,803 + -1.8
168,832 - +0.2
168,840 + -0.3
168,908 - -0.4
168,909 + +0.2
168,912 - +0.0
168,912 - +0.4
168,912 - +0.1
168,913 + -0.9
168,932 - -0.2
169,026 + MMJJ_RS00880 0.17 +0.7
169,036 - MMJJ_RS00880 0.18 +0.6
169,065 + MMJJ_RS00880 0.20 -0.4
169,189 + MMJJ_RS00880 0.30 -0.7
169,189 + MMJJ_RS00880 0.30 +2.0
169,193 + MMJJ_RS00880 0.31 -0.9
169,227 - MMJJ_RS00880 0.34 -1.1
169,238 - MMJJ_RS00880 0.34 +0.3
169,239 + MMJJ_RS00880 0.35 +1.4
169,243 - MMJJ_RS00880 0.35 +1.3
169,243 - MMJJ_RS00880 0.35 -1.8
169,243 - MMJJ_RS00880 0.35 +1.2
169,244 + MMJJ_RS00880 0.35 +0.6
169,244 + MMJJ_RS00880 0.35 -0.6
169,244 + MMJJ_RS00880 0.35 +0.8
169,287 + MMJJ_RS00880 0.38 -0.4
169,325 + MMJJ_RS00880 0.42 -0.2
169,329 - MMJJ_RS00880 0.42 -0.4
169,345 + MMJJ_RS00880 0.43 +1.6
169,397 - MMJJ_RS00880 0.47 -1.3
169,398 - MMJJ_RS00880 0.47 -0.2
169,400 - MMJJ_RS00880 0.48 -0.1
169,401 + MMJJ_RS00880 0.48 +0.5
169,401 + MMJJ_RS00880 0.48 +1.0
169,435 - MMJJ_RS00880 0.50 +1.0

Or see this region's nucleotide sequence