Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06530 and H281DRAFT_06531 overlap by 17 nucleotides H281DRAFT_06531 and H281DRAFT_06532 are separated by 6 nucleotides H281DRAFT_06532 and H281DRAFT_06533 are separated by 29 nucleotides
H281DRAFT_06530: H281DRAFT_06530 - hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) (EC 6.3.5.9)/cobyrinate a,c-diamide synthase (EC 6.3.5.11), at 11,024 to 12,322
_06530
H281DRAFT_06531: H281DRAFT_06531 - cob(II)yrinic acid a,c-diamide reductase /5,6-dimethylbenzimidazole synthase, at 12,306 to 12,986
_06531
H281DRAFT_06532: H281DRAFT_06532 - protein of unknown function (DUF4136), at 12,993 to 13,634
_06532
H281DRAFT_06533: H281DRAFT_06533 - sensor domain CHASE2-containing protein, at 13,664 to 16,243
_06533
Position (kb) 12
13 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 11.650 kb on + strand, within H281DRAFT_06530 at 11.651 kb on - strand at 11.651 kb on - strand, within H281DRAFT_06530 at 11.819 kb on + strand, within H281DRAFT_06530 at 11.820 kb on - strand, within H281DRAFT_06530 at 11.870 kb on + strand, within H281DRAFT_06530 at 12.150 kb on - strand, within H281DRAFT_06530 at 12.255 kb on - strand at 12.255 kb on - strand at 12.321 kb on - strand at 12.345 kb on + strand at 12.357 kb on + strand at 12.409 kb on + strand, within H281DRAFT_06531 at 12.503 kb on + strand, within H281DRAFT_06531 at 12.922 kb on + strand at 12.922 kb on + strand at 12.923 kb on - strand at 12.994 kb on + strand at 13.221 kb on - strand, within H281DRAFT_06532 at 13.351 kb on + strand, within H281DRAFT_06532 at 13.352 kb on - strand, within H281DRAFT_06532 at 13.352 kb on - strand, within H281DRAFT_06532 at 13.471 kb on + strand, within H281DRAFT_06532 at 13.471 kb on + strand, within H281DRAFT_06532 at 13.472 kb on - strand, within H281DRAFT_06532 at 13.535 kb on + strand, within H281DRAFT_06532 at 13.536 kb on - strand, within H281DRAFT_06532 at 13.536 kb on - strand, within H281DRAFT_06532 at 13.655 kb on - strand at 13.725 kb on + strand at 13.725 kb on + strand at 13.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 11,650 + H281DRAFT_06530 0.48 -2.0 11,651 - +1.1 11,651 - H281DRAFT_06530 0.48 +0.6 11,819 + H281DRAFT_06530 0.61 -3.9 11,820 - H281DRAFT_06530 0.61 -1.2 11,870 + H281DRAFT_06530 0.65 -2.3 12,150 - H281DRAFT_06530 0.87 -2.1 12,255 - -1.6 12,255 - -1.0 12,321 - -1.1 12,345 + +0.8 12,357 + +0.3 12,409 + H281DRAFT_06531 0.15 -0.5 12,503 + H281DRAFT_06531 0.29 -0.1 12,922 + +0.9 12,922 + -0.7 12,923 - +1.3 12,994 + +0.1 13,221 - H281DRAFT_06532 0.36 +0.6 13,351 + H281DRAFT_06532 0.56 -0.9 13,352 - H281DRAFT_06532 0.56 +0.6 13,352 - H281DRAFT_06532 0.56 +0.5 13,471 + H281DRAFT_06532 0.74 +0.4 13,471 + H281DRAFT_06532 0.74 -0.2 13,472 - H281DRAFT_06532 0.75 +1.1 13,535 + H281DRAFT_06532 0.84 +0.7 13,536 - H281DRAFT_06532 0.85 -0.4 13,536 - H281DRAFT_06532 0.85 +0.8 13,655 - +0.2 13,725 + -1.5 13,725 + +0.5 13,877 + +0.7
Or see this region's nucleotide sequence