Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06425 and H281DRAFT_06426 are separated by 333 nucleotides H281DRAFT_06426 and H281DRAFT_06427 are separated by 33 nucleotides
H281DRAFT_06425: H281DRAFT_06425 - Predicted membrane protein, at 26,106 to 26,495
_06425
H281DRAFT_06426: H281DRAFT_06426 - ATP-dependent Lon protease, at 26,829 to 29,207
_06426
H281DRAFT_06427: H281DRAFT_06427 - Molecular chaperone IbpA, HSP20 family, at 29,241 to 29,645
_06427
Position (kb) 26
27
28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 25.906 kb on + strand at 25.906 kb on + strand at 25.936 kb on - strand at 25.987 kb on - strand at 26.070 kb on + strand at 26.071 kb on - strand at 26.116 kb on - strand at 26.116 kb on - strand at 26.116 kb on - strand at 26.144 kb on + strand at 26.299 kb on + strand, within H281DRAFT_06425 at 26.514 kb on + strand at 26.515 kb on - strand at 26.673 kb on + strand at 26.673 kb on + strand at 26.674 kb on - strand at 26.682 kb on - strand at 26.743 kb on - strand at 26.743 kb on - strand at 26.743 kb on - strand at 26.743 kb on - strand at 26.837 kb on + strand at 26.838 kb on - strand at 27.126 kb on - strand, within H281DRAFT_06426 at 27.451 kb on - strand, within H281DRAFT_06426 at 27.452 kb on + strand, within H281DRAFT_06426 at 27.453 kb on - strand, within H281DRAFT_06426 at 27.453 kb on - strand, within H281DRAFT_06426 at 27.453 kb on - strand, within H281DRAFT_06426 at 27.685 kb on - strand, within H281DRAFT_06426 at 27.685 kb on - strand, within H281DRAFT_06426 at 27.781 kb on + strand, within H281DRAFT_06426 at 27.782 kb on - strand, within H281DRAFT_06426 at 27.782 kb on - strand, within H281DRAFT_06426 at 27.933 kb on - strand, within H281DRAFT_06426 at 27.955 kb on + strand, within H281DRAFT_06426 at 27.956 kb on - strand, within H281DRAFT_06426 at 27.956 kb on - strand, within H281DRAFT_06426 at 27.956 kb on - strand, within H281DRAFT_06426 at 27.956 kb on - strand, within H281DRAFT_06426 at 27.976 kb on - strand, within H281DRAFT_06426 at 28.837 kb on - strand, within H281DRAFT_06426 at 28.837 kb on - strand, within H281DRAFT_06426 at 28.912 kb on + strand, within H281DRAFT_06426 at 29.042 kb on + strand at 29.042 kb on + strand at 29.151 kb on + strand at 29.433 kb on + strand, within H281DRAFT_06427 at 29.434 kb on - strand, within H281DRAFT_06427 at 29.434 kb on - strand, within H281DRAFT_06427 at 29.434 kb on - strand, within H281DRAFT_06427 at 29.627 kb on + strand at 29.627 kb on + strand at 29.628 kb on - strand at 29.749 kb on - strand at 29.761 kb on + strand at 29.761 kb on + strand at 29.762 kb on - strand at 29.852 kb on + strand at 30.078 kb on + strand at 30.079 kb on - strand at 30.079 kb on - strand at 30.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 25,906 + -0.1 25,906 + +0.7 25,936 - -0.4 25,987 - -2.0 26,070 + -1.0 26,071 - -3.5 26,116 - +0.4 26,116 - +0.8 26,116 - -0.1 26,144 + -0.4 26,299 + H281DRAFT_06425 0.49 +1.8 26,514 + -1.7 26,515 - +0.1 26,673 + -0.3 26,673 + +0.2 26,674 - -0.6 26,682 - +0.5 26,743 - +0.7 26,743 - +0.4 26,743 - +0.5 26,743 - -0.5 26,837 + -0.4 26,838 - +0.4 27,126 - H281DRAFT_06426 0.12 -0.7 27,451 - H281DRAFT_06426 0.26 -0.1 27,452 + H281DRAFT_06426 0.26 -1.0 27,453 - H281DRAFT_06426 0.26 +1.1 27,453 - H281DRAFT_06426 0.26 -0.1 27,453 - H281DRAFT_06426 0.26 +0.0 27,685 - H281DRAFT_06426 0.36 +1.0 27,685 - H281DRAFT_06426 0.36 +0.7 27,781 + H281DRAFT_06426 0.40 -0.2 27,782 - H281DRAFT_06426 0.40 +0.8 27,782 - H281DRAFT_06426 0.40 -1.1 27,933 - H281DRAFT_06426 0.46 +0.2 27,955 + H281DRAFT_06426 0.47 +0.6 27,956 - H281DRAFT_06426 0.47 +0.4 27,956 - H281DRAFT_06426 0.47 +0.0 27,956 - H281DRAFT_06426 0.47 +1.3 27,956 - H281DRAFT_06426 0.47 -0.4 27,976 - H281DRAFT_06426 0.48 -0.3 28,837 - H281DRAFT_06426 0.84 +0.6 28,837 - H281DRAFT_06426 0.84 +0.8 28,912 + H281DRAFT_06426 0.88 +1.2 29,042 + +0.7 29,042 + +0.1 29,151 + -0.8 29,433 + H281DRAFT_06427 0.47 +1.8 29,434 - H281DRAFT_06427 0.48 +0.5 29,434 - H281DRAFT_06427 0.48 +1.6 29,434 - H281DRAFT_06427 0.48 +4.7 29,627 + -2.9 29,627 + +0.3 29,628 - -0.6 29,749 - +0.1 29,761 + -1.5 29,761 + +0.5 29,762 - +0.5 29,852 + +0.0 30,078 + +0.4 30,079 - -0.3 30,079 - -0.3 30,167 - +0.5
Or see this region's nucleotide sequence