Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06377 and H281DRAFT_06378 are separated by 76 nucleotides H281DRAFT_06378 and H281DRAFT_06379 are separated by 38 nucleotides H281DRAFT_06379 and H281DRAFT_06380 overlap by 4 nucleotides
H281DRAFT_06377: H281DRAFT_06377 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 49,821 to 50,570
_06377
H281DRAFT_06378: H281DRAFT_06378 - D-galactonate transporter, at 50,647 to 51,975
_06378
H281DRAFT_06379: H281DRAFT_06379 - transketolase subunit A, at 52,014 to 52,859
_06379
H281DRAFT_06380: H281DRAFT_06380 - transketolase subunit B, at 52,856 to 53,857
_06380
Position (kb) 50
51
52 Strain fitness (log2 ratio) -1
0
1
2
3 at 49.741 kb on + strand at 49.741 kb on + strand at 49.741 kb on + strand at 49.752 kb on + strand at 50.105 kb on - strand, within H281DRAFT_06377 at 50.114 kb on - strand, within H281DRAFT_06377 at 50.172 kb on + strand, within H281DRAFT_06377 at 50.173 kb on - strand, within H281DRAFT_06377 at 50.173 kb on - strand, within H281DRAFT_06377 at 50.175 kb on - strand, within H281DRAFT_06377 at 50.175 kb on - strand, within H281DRAFT_06377 at 50.189 kb on - strand, within H281DRAFT_06377 at 51.082 kb on + strand, within H281DRAFT_06378 at 51.092 kb on - strand, within H281DRAFT_06378 at 51.092 kb on - strand, within H281DRAFT_06378 at 51.161 kb on + strand, within H281DRAFT_06378 at 51.469 kb on + strand, within H281DRAFT_06378 at 52.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 49,741 + -0.3 49,741 + +1.0 49,741 + -0.4 49,752 + +0.6 50,105 - H281DRAFT_06377 0.38 +0.3 50,114 - H281DRAFT_06377 0.39 +3.7 50,172 + H281DRAFT_06377 0.47 -0.5 50,173 - H281DRAFT_06377 0.47 -0.7 50,173 - H281DRAFT_06377 0.47 +0.5 50,175 - H281DRAFT_06377 0.47 -0.2 50,175 - H281DRAFT_06377 0.47 -0.2 50,189 - H281DRAFT_06377 0.49 +0.7 51,082 + H281DRAFT_06378 0.33 +0.5 51,092 - H281DRAFT_06378 0.33 -0.5 51,092 - H281DRAFT_06378 0.33 -0.3 51,161 + H281DRAFT_06378 0.39 +0.2 51,469 + H281DRAFT_06378 0.62 -0.8 52,088 - +1.5
Or see this region's nucleotide sequence