Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05477 and H281DRAFT_05478 are separated by 216 nucleotides H281DRAFT_05478 and H281DRAFT_05479 are separated by 360 nucleotides H281DRAFT_05479 and H281DRAFT_05480 are separated by 69 nucleotides
H281DRAFT_05477: H281DRAFT_05477 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 58,502 to 60,277
_05477
H281DRAFT_05478: H281DRAFT_05478 - hypothetical protein, at 60,494 to 60,793
_05478
H281DRAFT_05479: H281DRAFT_05479 - hypothetical protein, at 61,154 to 61,339
_05479
H281DRAFT_05480: H281DRAFT_05480 - Nucleotide-binding universal stress protein, UspA family, at 61,409 to 61,849
_05480
Position (kb) 60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 59.694 kb on - strand, within H281DRAFT_05477 at 59.694 kb on - strand, within H281DRAFT_05477 at 59.868 kb on - strand, within H281DRAFT_05477 at 59.995 kb on - strand, within H281DRAFT_05477 at 59.995 kb on - strand, within H281DRAFT_05477 at 60.162 kb on - strand at 60.162 kb on - strand at 60.162 kb on - strand at 60.229 kb on + strand at 60.650 kb on + strand, within H281DRAFT_05478 at 60.650 kb on + strand, within H281DRAFT_05478 at 60.651 kb on - strand, within H281DRAFT_05478 at 60.671 kb on + strand, within H281DRAFT_05478 at 60.792 kb on - strand at 60.822 kb on + strand at 60.822 kb on + strand at 60.822 kb on + strand at 60.866 kb on - strand at 60.866 kb on - strand at 60.965 kb on - strand at 60.965 kb on - strand at 60.975 kb on - strand at 60.977 kb on - strand at 61.043 kb on + strand at 61.043 kb on + strand at 61.044 kb on - strand at 61.059 kb on + strand at 61.060 kb on - strand at 61.275 kb on + strand, within H281DRAFT_05479 at 61.440 kb on - strand at 61.571 kb on - strand, within H281DRAFT_05480 at 61.571 kb on - strand, within H281DRAFT_05480 at 61.571 kb on - strand, within H281DRAFT_05480 at 61.674 kb on - strand, within H281DRAFT_05480
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 59,694 - H281DRAFT_05477 0.67 -0.3 59,694 - H281DRAFT_05477 0.67 +1.1 59,868 - H281DRAFT_05477 0.77 +0.4 59,995 - H281DRAFT_05477 0.84 +1.2 59,995 - H281DRAFT_05477 0.84 +0.0 60,162 - -0.4 60,162 - +0.5 60,162 - +0.0 60,229 + -3.4 60,650 + H281DRAFT_05478 0.52 +0.1 60,650 + H281DRAFT_05478 0.52 -0.6 60,651 - H281DRAFT_05478 0.52 +1.6 60,671 + H281DRAFT_05478 0.59 -0.8 60,792 - -3.3 60,822 + -1.3 60,822 + +0.2 60,822 + -0.6 60,866 - +0.7 60,866 - +0.8 60,965 - -0.2 60,965 - +0.4 60,975 - +0.3 60,977 - +0.6 61,043 + -0.3 61,043 + -2.4 61,044 - -0.2 61,059 + +0.3 61,060 - -0.7 61,275 + H281DRAFT_05479 0.65 +0.2 61,440 - +0.6 61,571 - H281DRAFT_05480 0.37 -1.3 61,571 - H281DRAFT_05480 0.37 -1.0 61,571 - H281DRAFT_05480 0.37 +0.3 61,674 - H281DRAFT_05480 0.60 -0.1
Or see this region's nucleotide sequence