Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05297 and H281DRAFT_05298 are separated by 18 nucleotides H281DRAFT_05298 and H281DRAFT_05299 are separated by 19 nucleotides H281DRAFT_05299 and H281DRAFT_05300 are separated by 90 nucleotides
H281DRAFT_05297: H281DRAFT_05297 - amino acid ABC transporter ATP-binding protein, PAAT family, at 40,184 to 41,047
_05297
H281DRAFT_05298: H281DRAFT_05298 - amino acid ABC transporter membrane protein 2, PAAT family, at 41,066 to 41,728
_05298
H281DRAFT_05299: H281DRAFT_05299 - amino acid ABC transporter membrane protein 1, PAAT family, at 41,748 to 42,398
_05299
H281DRAFT_05300: H281DRAFT_05300 - amino acid ABC transporter substrate-binding protein, PAAT family, at 42,489 to 43,316
_05300
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.785 kb on + strand, within H281DRAFT_05297 at 40.896 kb on - strand, within H281DRAFT_05297 at 41.553 kb on + strand, within H281DRAFT_05298 at 41.728 kb on + strand at 41.729 kb on - strand at 41.816 kb on - strand, within H281DRAFT_05299 at 41.854 kb on + strand at 41.854 kb on + strand, within H281DRAFT_05299 at 41.855 kb on - strand, within H281DRAFT_05299 at 42.046 kb on - strand, within H281DRAFT_05299 at 42.046 kb on - strand, within H281DRAFT_05299 at 42.046 kb on - strand, within H281DRAFT_05299 at 42.097 kb on + strand, within H281DRAFT_05299 at 42.097 kb on + strand, within H281DRAFT_05299 at 42.098 kb on - strand, within H281DRAFT_05299 at 42.176 kb on - strand, within H281DRAFT_05299 at 42.229 kb on + strand, within H281DRAFT_05299 at 42.468 kb on + strand at 42.719 kb on - strand, within H281DRAFT_05300 at 42.839 kb on - strand, within H281DRAFT_05300 at 42.839 kb on - strand, within H281DRAFT_05300 at 42.976 kb on + strand, within H281DRAFT_05300 at 42.977 kb on - strand, within H281DRAFT_05300 at 43.382 kb on - strand at 43.383 kb on + strand at 43.383 kb on + strand at 43.384 kb on - strand at 43.385 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 40,785 + H281DRAFT_05297 0.70 -0.0 40,896 - H281DRAFT_05297 0.82 -0.3 41,553 + H281DRAFT_05298 0.73 -1.3 41,728 + +0.8 41,729 - +0.8 41,816 - H281DRAFT_05299 0.10 -0.5 41,854 + -1.8 41,854 + H281DRAFT_05299 0.16 +0.5 41,855 - H281DRAFT_05299 0.16 -0.8 42,046 - H281DRAFT_05299 0.46 +0.2 42,046 - H281DRAFT_05299 0.46 +1.0 42,046 - H281DRAFT_05299 0.46 +0.7 42,097 + H281DRAFT_05299 0.54 -0.1 42,097 + H281DRAFT_05299 0.54 +0.4 42,098 - H281DRAFT_05299 0.54 +0.6 42,176 - H281DRAFT_05299 0.66 +0.5 42,229 + H281DRAFT_05299 0.74 +1.0 42,468 + -0.6 42,719 - H281DRAFT_05300 0.28 +0.5 42,839 - H281DRAFT_05300 0.42 +2.4 42,839 - H281DRAFT_05300 0.42 +0.6 42,976 + H281DRAFT_05300 0.59 +1.0 42,977 - H281DRAFT_05300 0.59 +1.1 43,382 - -0.0 43,383 + -0.5 43,383 + -0.6 43,384 - +0.2 43,385 + -0.6
Or see this region's nucleotide sequence