Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05155

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05154 and H281DRAFT_05155 are separated by 309 nucleotidesH281DRAFT_05155 and H281DRAFT_05156 are separated by 354 nucleotides H281DRAFT_05154: H281DRAFT_05154 - murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13). Serine peptidase. MEROPS family S66, at 107,037 to 107,963 _05154 H281DRAFT_05155: H281DRAFT_05155 - transcriptional regulator, GntR family, at 108,273 to 109,073 _05155 H281DRAFT_05156: H281DRAFT_05156 - nucleobase:cation symporter-1, NCS1 family, at 109,428 to 110,909 _05156 Position (kb) 108 109 110Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 107.615 kb on + strand, within H281DRAFT_05154at 107.616 kb on - strand, within H281DRAFT_05154at 107.692 kb on - strand, within H281DRAFT_05154at 107.877 kb on - strandat 107.877 kb on - strandat 108.269 kb on + strandat 108.270 kb on - strandat 109.014 kb on - strandat 109.014 kb on - strandat 109.038 kb on - strandat 109.038 kb on - strandat 109.533 kb on + strandat 109.626 kb on + strand, within H281DRAFT_05156at 109.627 kb on - strand, within H281DRAFT_05156at 109.860 kb on + strand, within H281DRAFT_05156at 110.068 kb on - strand, within H281DRAFT_05156

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
remove
107,615 + H281DRAFT_05154 0.62 +0.6
107,616 - H281DRAFT_05154 0.62 +0.6
107,692 - H281DRAFT_05154 0.71 -3.1
107,877 - +0.5
107,877 - +1.9
108,269 + +0.0
108,270 - +0.3
109,014 - -0.2
109,014 - -1.3
109,038 - +0.2
109,038 - +0.2
109,533 + -0.1
109,626 + H281DRAFT_05156 0.13 -0.0
109,627 - H281DRAFT_05156 0.13 +0.7
109,860 + H281DRAFT_05156 0.29 +0.4
110,068 - H281DRAFT_05156 0.43 +0.3

Or see this region's nucleotide sequence