Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04892 and H281DRAFT_04893 are separated by 204 nucleotides H281DRAFT_04893 and H281DRAFT_04894 are separated by 77 nucleotides
H281DRAFT_04892: H281DRAFT_04892 - Protein of unknown function (DUF1328), at 43,109 to 43,270
_04892
H281DRAFT_04893: H281DRAFT_04893 - transcriptional regulator, LysR family, at 43,475 to 44,398
_04893
H281DRAFT_04894: H281DRAFT_04894 - inner membrane transporter RhtA, at 44,476 to 45,366
_04894
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1 at 42.943 kb on - strand at 42.943 kb on - strand at 43.075 kb on + strand at 43.089 kb on - strand at 43.287 kb on - strand at 43.357 kb on + strand at 43.409 kb on + strand at 43.409 kb on + strand at 43.409 kb on + strand at 43.410 kb on - strand at 43.962 kb on - strand, within H281DRAFT_04893 at 43.962 kb on - strand, within H281DRAFT_04893 at 44.406 kb on - strand at 44.419 kb on - strand at 44.711 kb on - strand, within H281DRAFT_04894 at 44.797 kb on - strand, within H281DRAFT_04894 at 44.999 kb on - strand, within H281DRAFT_04894 at 45.170 kb on + strand, within H281DRAFT_04894 at 45.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 42,943 - -0.2 42,943 - -0.2 43,075 + -0.0 43,089 - +0.3 43,287 - -0.5 43,357 + +0.2 43,409 + +0.6 43,409 + -0.3 43,409 + -0.9 43,410 - -0.1 43,962 - H281DRAFT_04893 0.53 +0.3 43,962 - H281DRAFT_04893 0.53 +0.5 44,406 - +0.7 44,419 - +0.1 44,711 - H281DRAFT_04894 0.26 -0.0 44,797 - H281DRAFT_04894 0.36 -0.4 44,999 - H281DRAFT_04894 0.59 -1.1 45,170 + H281DRAFT_04894 0.78 -0.8 45,297 + -0.4
Or see this region's nucleotide sequence