Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04802 and H281DRAFT_04803 are separated by 183 nucleotides H281DRAFT_04803 and H281DRAFT_04804 are separated by 856 nucleotides
H281DRAFT_04802: H281DRAFT_04802 - negative transcriptional regulator, PaiB family, at 234,746 to 235,381
_04802
H281DRAFT_04803: H281DRAFT_04803 - hypothetical protein, at 235,565 to 237,127
_04803
H281DRAFT_04804: H281DRAFT_04804 - hypothetical protein, at 237,984 to 239,099
_04804
Position (kb) 235
236
237
238 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 234.583 kb on - strand at 234.929 kb on - strand, within H281DRAFT_04802 at 235.129 kb on + strand, within H281DRAFT_04802 at 235.160 kb on + strand, within H281DRAFT_04802 at 235.377 kb on + strand at 235.627 kb on + strand at 235.739 kb on - strand, within H281DRAFT_04803 at 235.739 kb on - strand, within H281DRAFT_04803 at 235.739 kb on - strand, within H281DRAFT_04803 at 235.744 kb on - strand, within H281DRAFT_04803 at 235.744 kb on - strand, within H281DRAFT_04803 at 235.887 kb on + strand, within H281DRAFT_04803 at 235.887 kb on + strand, within H281DRAFT_04803 at 235.888 kb on - strand, within H281DRAFT_04803 at 235.896 kb on + strand, within H281DRAFT_04803 at 235.897 kb on - strand, within H281DRAFT_04803 at 235.897 kb on - strand, within H281DRAFT_04803 at 235.897 kb on - strand, within H281DRAFT_04803 at 236.178 kb on + strand, within H281DRAFT_04803 at 236.233 kb on - strand, within H281DRAFT_04803 at 236.321 kb on - strand, within H281DRAFT_04803 at 236.398 kb on - strand, within H281DRAFT_04803 at 236.448 kb on + strand, within H281DRAFT_04803 at 236.449 kb on - strand, within H281DRAFT_04803 at 236.522 kb on - strand, within H281DRAFT_04803 at 236.586 kb on + strand, within H281DRAFT_04803 at 236.586 kb on + strand, within H281DRAFT_04803 at 236.625 kb on + strand, within H281DRAFT_04803 at 236.625 kb on + strand, within H281DRAFT_04803 at 236.625 kb on + strand, within H281DRAFT_04803 at 236.729 kb on - strand, within H281DRAFT_04803 at 236.768 kb on - strand, within H281DRAFT_04803 at 236.796 kb on + strand, within H281DRAFT_04803 at 236.797 kb on - strand, within H281DRAFT_04803 at 236.797 kb on - strand, within H281DRAFT_04803 at 236.862 kb on + strand, within H281DRAFT_04803 at 236.862 kb on + strand, within H281DRAFT_04803 at 236.862 kb on + strand, within H281DRAFT_04803 at 236.863 kb on - strand, within H281DRAFT_04803 at 237.073 kb on + strand at 237.182 kb on + strand at 237.262 kb on + strand at 237.310 kb on + strand at 237.610 kb on - strand at 237.708 kb on + strand at 237.812 kb on + strand at 237.812 kb on + strand at 237.812 kb on + strand at 237.813 kb on - strand at 237.861 kb on + strand at 238.108 kb on + strand, within H281DRAFT_04804 at 238.108 kb on + strand, within H281DRAFT_04804 at 238.108 kb on + strand, within H281DRAFT_04804 at 238.108 kb on + strand, within H281DRAFT_04804 at 238.112 kb on + strand, within H281DRAFT_04804 at 238.112 kb on + strand, within H281DRAFT_04804 at 238.113 kb on - strand, within H281DRAFT_04804
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 234,583 - +0.7 234,929 - H281DRAFT_04802 0.29 -1.0 235,129 + H281DRAFT_04802 0.60 +0.9 235,160 + H281DRAFT_04802 0.65 +1.0 235,377 + +0.3 235,627 + +1.0 235,739 - H281DRAFT_04803 0.11 +0.9 235,739 - H281DRAFT_04803 0.11 +0.1 235,739 - H281DRAFT_04803 0.11 +0.3 235,744 - H281DRAFT_04803 0.11 +0.3 235,744 - H281DRAFT_04803 0.11 +0.0 235,887 + H281DRAFT_04803 0.21 -0.9 235,887 + H281DRAFT_04803 0.21 +0.8 235,888 - H281DRAFT_04803 0.21 +1.2 235,896 + H281DRAFT_04803 0.21 -0.6 235,897 - H281DRAFT_04803 0.21 -0.8 235,897 - H281DRAFT_04803 0.21 -0.2 235,897 - H281DRAFT_04803 0.21 -0.2 236,178 + H281DRAFT_04803 0.39 +0.3 236,233 - H281DRAFT_04803 0.43 +0.3 236,321 - H281DRAFT_04803 0.48 -1.4 236,398 - H281DRAFT_04803 0.53 +0.1 236,448 + H281DRAFT_04803 0.56 -0.7 236,449 - H281DRAFT_04803 0.57 -0.2 236,522 - H281DRAFT_04803 0.61 -0.2 236,586 + H281DRAFT_04803 0.65 +0.8 236,586 + H281DRAFT_04803 0.65 +0.6 236,625 + H281DRAFT_04803 0.68 -0.0 236,625 + H281DRAFT_04803 0.68 +1.4 236,625 + H281DRAFT_04803 0.68 +0.1 236,729 - H281DRAFT_04803 0.74 +0.8 236,768 - H281DRAFT_04803 0.77 -0.2 236,796 + H281DRAFT_04803 0.79 +0.3 236,797 - H281DRAFT_04803 0.79 -3.7 236,797 - H281DRAFT_04803 0.79 +0.4 236,862 + H281DRAFT_04803 0.83 +0.3 236,862 + H281DRAFT_04803 0.83 +0.6 236,862 + H281DRAFT_04803 0.83 -0.9 236,863 - H281DRAFT_04803 0.83 +0.9 237,073 + +0.8 237,182 + +0.5 237,262 + +0.7 237,310 + -1.0 237,610 - -0.2 237,708 + +0.5 237,812 + +1.2 237,812 + -0.2 237,812 + -0.7 237,813 - -1.0 237,861 + -1.1 238,108 + H281DRAFT_04804 0.11 -0.0 238,108 + H281DRAFT_04804 0.11 -0.3 238,108 + H281DRAFT_04804 0.11 +0.4 238,108 + H281DRAFT_04804 0.11 +0.8 238,112 + H281DRAFT_04804 0.11 +0.7 238,112 + H281DRAFT_04804 0.11 -0.7 238,113 - H281DRAFT_04804 0.12 +0.7
Or see this region's nucleotide sequence