Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04801 and H281DRAFT_04802 are separated by 506 nucleotides H281DRAFT_04802 and H281DRAFT_04803 are separated by 183 nucleotides
H281DRAFT_04801: H281DRAFT_04801 - galactose oxidase, at 232,281 to 234,239
_04801
H281DRAFT_04802: H281DRAFT_04802 - negative transcriptional regulator, PaiB family, at 234,746 to 235,381
_04802
H281DRAFT_04803: H281DRAFT_04803 - hypothetical protein, at 235,565 to 237,127
_04803
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 233.808 kb on + strand, within H281DRAFT_04801 at 233.919 kb on + strand, within H281DRAFT_04801 at 233.966 kb on + strand at 233.993 kb on + strand, within H281DRAFT_04801 at 234.114 kb on - strand at 234.175 kb on - strand at 234.297 kb on + strand at 234.448 kb on + strand at 234.487 kb on + strand at 234.497 kb on + strand at 234.583 kb on - strand at 234.929 kb on - strand, within H281DRAFT_04802 at 235.129 kb on + strand, within H281DRAFT_04802 at 235.160 kb on + strand, within H281DRAFT_04802 at 235.377 kb on + strand at 235.627 kb on + strand at 235.739 kb on - strand, within H281DRAFT_04803 at 235.739 kb on - strand, within H281DRAFT_04803 at 235.739 kb on - strand, within H281DRAFT_04803 at 235.744 kb on - strand, within H281DRAFT_04803 at 235.744 kb on - strand, within H281DRAFT_04803 at 235.887 kb on + strand, within H281DRAFT_04803 at 235.887 kb on + strand, within H281DRAFT_04803 at 235.888 kb on - strand, within H281DRAFT_04803 at 235.896 kb on + strand, within H281DRAFT_04803 at 235.897 kb on - strand, within H281DRAFT_04803 at 235.897 kb on - strand, within H281DRAFT_04803 at 235.897 kb on - strand, within H281DRAFT_04803 at 236.178 kb on + strand, within H281DRAFT_04803 at 236.233 kb on - strand, within H281DRAFT_04803 at 236.321 kb on - strand, within H281DRAFT_04803
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 233,808 + H281DRAFT_04801 0.78 +0.0 233,919 + H281DRAFT_04801 0.84 -0.6 233,966 + +3.0 233,993 + H281DRAFT_04801 0.87 +0.2 234,114 - +0.3 234,175 - +0.6 234,297 + -0.9 234,448 + +0.1 234,487 + -2.4 234,497 + -0.1 234,583 - +0.7 234,929 - H281DRAFT_04802 0.29 -1.0 235,129 + H281DRAFT_04802 0.60 +0.9 235,160 + H281DRAFT_04802 0.65 +1.0 235,377 + +0.3 235,627 + +1.0 235,739 - H281DRAFT_04803 0.11 +0.9 235,739 - H281DRAFT_04803 0.11 +0.1 235,739 - H281DRAFT_04803 0.11 +0.3 235,744 - H281DRAFT_04803 0.11 +0.3 235,744 - H281DRAFT_04803 0.11 +0.0 235,887 + H281DRAFT_04803 0.21 -0.9 235,887 + H281DRAFT_04803 0.21 +0.8 235,888 - H281DRAFT_04803 0.21 +1.2 235,896 + H281DRAFT_04803 0.21 -0.6 235,897 - H281DRAFT_04803 0.21 -0.8 235,897 - H281DRAFT_04803 0.21 -0.2 235,897 - H281DRAFT_04803 0.21 -0.2 236,178 + H281DRAFT_04803 0.39 +0.3 236,233 - H281DRAFT_04803 0.43 +0.3 236,321 - H281DRAFT_04803 0.48 -1.4
Or see this region's nucleotide sequence