Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04653 and H281DRAFT_04654 are separated by 26 nucleotides H281DRAFT_04654 and H281DRAFT_04655 overlap by 1 nucleotides
H281DRAFT_04653: H281DRAFT_04653 - NAD(P) transhydrogenase subunit alpha, at 54,840 to 55,982
_04653
H281DRAFT_04654: H281DRAFT_04654 - NAD(P) transhydrogenase subunit alpha, at 56,009 to 56,338
_04654
H281DRAFT_04655: H281DRAFT_04655 - NAD(P) transhydrogenase subunit beta, at 56,338 to 57,792
_04655
Position (kb) 56
57 Strain fitness (log2 ratio) -1
0
1
2
3 at 55.145 kb on - strand, within H281DRAFT_04653 at 55.252 kb on - strand, within H281DRAFT_04653 at 55.281 kb on + strand, within H281DRAFT_04653 at 55.483 kb on - strand, within H281DRAFT_04653 at 55.725 kb on + strand, within H281DRAFT_04653 at 55.726 kb on - strand, within H281DRAFT_04653 at 55.726 kb on - strand, within H281DRAFT_04653 at 55.851 kb on + strand, within H281DRAFT_04653 at 55.980 kb on + strand at 55.981 kb on - strand at 56.063 kb on + strand, within H281DRAFT_04654 at 56.064 kb on - strand, within H281DRAFT_04654 at 56.336 kb on + strand at 56.365 kb on + strand at 56.365 kb on + strand at 56.365 kb on + strand at 56.365 kb on + strand at 56.365 kb on + strand at 56.366 kb on - strand at 56.439 kb on + strand at 56.440 kb on - strand at 56.440 kb on - strand at 56.775 kb on + strand, within H281DRAFT_04655 at 56.776 kb on - strand, within H281DRAFT_04655 at 56.839 kb on + strand, within H281DRAFT_04655 at 56.875 kb on + strand, within H281DRAFT_04655 at 56.875 kb on + strand, within H281DRAFT_04655 at 57.064 kb on + strand, within H281DRAFT_04655 at 57.163 kb on + strand, within H281DRAFT_04655 at 57.163 kb on + strand, within H281DRAFT_04655 at 57.164 kb on - strand, within H281DRAFT_04655
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 55,145 - H281DRAFT_04653 0.27 +0.2 55,252 - H281DRAFT_04653 0.36 -0.6 55,281 + H281DRAFT_04653 0.39 +0.9 55,483 - H281DRAFT_04653 0.56 +1.1 55,725 + H281DRAFT_04653 0.77 -0.4 55,726 - H281DRAFT_04653 0.78 +0.3 55,726 - H281DRAFT_04653 0.78 -0.5 55,851 + H281DRAFT_04653 0.88 -0.6 55,980 + +0.3 55,981 - +0.0 56,063 + H281DRAFT_04654 0.16 -0.8 56,064 - H281DRAFT_04654 0.17 -0.7 56,336 + +0.1 56,365 + +0.3 56,365 + -1.1 56,365 + -1.1 56,365 + -0.1 56,365 + +0.5 56,366 - +0.0 56,439 + -1.3 56,440 - -0.9 56,440 - +0.3 56,775 + H281DRAFT_04655 0.30 +0.4 56,776 - H281DRAFT_04655 0.30 -0.7 56,839 + H281DRAFT_04655 0.34 -0.2 56,875 + H281DRAFT_04655 0.37 +0.5 56,875 + H281DRAFT_04655 0.37 +3.0 57,064 + H281DRAFT_04655 0.50 -1.0 57,163 + H281DRAFT_04655 0.57 -1.1 57,163 + H281DRAFT_04655 0.57 -1.2 57,164 - H281DRAFT_04655 0.57 +0.8
Or see this region's nucleotide sequence