Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04362 and H281DRAFT_04363 are separated by 88 nucleotides H281DRAFT_04363 and H281DRAFT_04364 overlap by 14 nucleotides H281DRAFT_04364 and H281DRAFT_04365 overlap by 4 nucleotides H281DRAFT_04365 and H281DRAFT_04366 are separated by 20 nucleotides
H281DRAFT_04362: H281DRAFT_04362 - RNAse III (EC 3.1.26.3), at 79,254 to 80,624
_04362
H281DRAFT_04363: H281DRAFT_04363 - GTP-binding protein Era, at 80,713 to 81,576
_04363
H281DRAFT_04364: H281DRAFT_04364 - DNA replication and repair protein RecO, at 81,563 to 82,480
_04364
H281DRAFT_04365: H281DRAFT_04365 - pyridoxine 5'-phosphate synthase, at 82,477 to 83,241
_04365
H281DRAFT_04366: H281DRAFT_04366 - holo-[acyl-carrier protein] synthase, at 83,262 to 83,687
_04366
Position (kb) 81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 80.676 kb on + strand at 81.562 kb on + strand at 81.688 kb on + strand, within H281DRAFT_04364 at 81.805 kb on + strand, within H281DRAFT_04364 at 81.805 kb on + strand, within H281DRAFT_04364 at 81.810 kb on - strand, within H281DRAFT_04364 at 81.969 kb on + strand, within H281DRAFT_04364 at 81.973 kb on + strand, within H281DRAFT_04364 at 81.974 kb on - strand, within H281DRAFT_04364 at 82.109 kb on + strand, within H281DRAFT_04364 at 82.109 kb on + strand, within H281DRAFT_04364 at 82.109 kb on + strand, within H281DRAFT_04364 at 82.109 kb on + strand, within H281DRAFT_04364 at 82.110 kb on - strand, within H281DRAFT_04364 at 82.110 kb on - strand, within H281DRAFT_04364 at 82.110 kb on - strand, within H281DRAFT_04364 at 82.110 kb on - strand, within H281DRAFT_04364 at 82.257 kb on - strand, within H281DRAFT_04364 at 82.362 kb on - strand, within H281DRAFT_04364 at 82.362 kb on - strand, within H281DRAFT_04364 at 82.362 kb on - strand, within H281DRAFT_04364 at 82.362 kb on - strand, within H281DRAFT_04364 at 82.421 kb on + strand at 82.476 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 80,676 + -1.2 81,562 + -0.3 81,688 + H281DRAFT_04364 0.14 +0.3 81,805 + H281DRAFT_04364 0.26 -0.7 81,805 + H281DRAFT_04364 0.26 -0.3 81,810 - H281DRAFT_04364 0.27 +0.7 81,969 + H281DRAFT_04364 0.44 +1.9 81,973 + H281DRAFT_04364 0.45 -0.0 81,974 - H281DRAFT_04364 0.45 +0.5 82,109 + H281DRAFT_04364 0.59 -3.0 82,109 + H281DRAFT_04364 0.59 -1.0 82,109 + H281DRAFT_04364 0.59 +1.7 82,109 + H281DRAFT_04364 0.59 +0.2 82,110 - H281DRAFT_04364 0.60 +1.5 82,110 - H281DRAFT_04364 0.60 -1.8 82,110 - H281DRAFT_04364 0.60 -0.7 82,110 - H281DRAFT_04364 0.60 -0.6 82,257 - H281DRAFT_04364 0.76 +0.6 82,362 - H281DRAFT_04364 0.87 -0.1 82,362 - H281DRAFT_04364 0.87 -1.0 82,362 - H281DRAFT_04364 0.87 -0.3 82,362 - H281DRAFT_04364 0.87 +1.3 82,421 + +0.4 82,476 + +1.1
Or see this region's nucleotide sequence