Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03517 and H281DRAFT_03518 are separated by 197 nucleotides H281DRAFT_03518 and H281DRAFT_03519 are separated by 439 nucleotides H281DRAFT_03519 and H281DRAFT_03520 are separated by 370 nucleotides
H281DRAFT_03517: H281DRAFT_03517 - 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 17,538 to 18,413
_03517
H281DRAFT_03518: H281DRAFT_03518 - hypothetical protein, at 18,611 to 18,916
_03518
H281DRAFT_03519: H281DRAFT_03519 - hypothetical protein, at 19,356 to 19,514
_03519
H281DRAFT_03520: H281DRAFT_03520 - hypothetical protein, at 19,885 to 21,225
_03520
Position (kb) 19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 18.435 kb on + strand at 18.436 kb on - strand at 18.436 kb on - strand at 18.438 kb on + strand at 18.438 kb on + strand at 18.439 kb on - strand at 18.439 kb on - strand at 18.439 kb on - strand at 18.495 kb on - strand at 18.509 kb on + strand at 18.612 kb on + strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.663 kb on + strand, within H281DRAFT_03518 at 18.663 kb on + strand, within H281DRAFT_03518 at 18.720 kb on + strand, within H281DRAFT_03518 at 18.724 kb on - strand, within H281DRAFT_03518 at 18.787 kb on - strand, within H281DRAFT_03518 at 18.916 kb on + strand at 18.916 kb on + strand at 18.916 kb on + strand at 18.917 kb on - strand at 18.917 kb on - strand at 18.917 kb on - strand at 18.917 kb on - strand at 19.090 kb on - strand at 19.172 kb on - strand at 19.193 kb on + strand at 19.224 kb on + strand at 19.225 kb on - strand at 19.225 kb on - strand at 19.225 kb on - strand at 19.226 kb on + strand at 19.226 kb on + strand at 19.226 kb on + strand at 19.227 kb on - strand at 19.354 kb on + strand at 19.355 kb on - strand at 19.355 kb on - strand at 19.355 kb on - strand at 19.355 kb on - strand at 19.357 kb on + strand at 19.357 kb on + strand at 19.432 kb on + strand, within H281DRAFT_03519 at 19.438 kb on + strand, within H281DRAFT_03519 at 19.439 kb on - strand, within H281DRAFT_03519 at 19.531 kb on + strand at 19.532 kb on - strand at 19.607 kb on + strand at 19.607 kb on + strand at 19.607 kb on + strand at 19.607 kb on + strand at 19.608 kb on - strand at 19.608 kb on - strand at 19.664 kb on - strand at 19.664 kb on - strand at 19.743 kb on + strand at 19.744 kb on - strand at 19.744 kb on - strand at 19.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 18,435 + +0.1 18,436 - -0.8 18,436 - -0.4 18,438 + +0.0 18,438 + -1.3 18,439 - -1.1 18,439 - -0.8 18,439 - -1.1 18,495 - +1.4 18,509 + +3.9 18,612 + -1.6 18,613 - -0.1 18,613 - -0.1 18,663 + H281DRAFT_03518 0.17 +2.1 18,663 + H281DRAFT_03518 0.17 +1.0 18,720 + H281DRAFT_03518 0.36 +0.9 18,724 - H281DRAFT_03518 0.37 +0.0 18,787 - H281DRAFT_03518 0.58 -0.9 18,916 + +1.1 18,916 + -0.7 18,916 + -1.1 18,917 - +0.5 18,917 - -0.9 18,917 - +1.4 18,917 - +0.5 19,090 - -0.4 19,172 - +0.1 19,193 + +0.5 19,224 + +0.1 19,225 - +0.3 19,225 - -0.5 19,225 - -0.0 19,226 + +0.5 19,226 + -0.2 19,226 + +0.4 19,227 - -0.5 19,354 + +0.0 19,355 - -0.4 19,355 - -1.2 19,355 - +0.7 19,355 - -1.4 19,357 + -1.0 19,357 + -1.7 19,432 + H281DRAFT_03519 0.48 -0.8 19,438 + H281DRAFT_03519 0.52 -0.1 19,439 - H281DRAFT_03519 0.52 -0.6 19,531 + +0.1 19,532 - +0.4 19,607 + -0.3 19,607 + +3.6 19,607 + +0.3 19,607 + -0.1 19,608 - -0.6 19,608 - -0.7 19,664 - -0.8 19,664 - +0.5 19,743 + -0.4 19,744 - -3.2 19,744 - +1.1 19,744 - +1.1
Or see this region's nucleotide sequence