Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03450 and H281DRAFT_03451 overlap by 4 nucleotides H281DRAFT_03451 and H281DRAFT_03452 overlap by 4 nucleotides H281DRAFT_03452 and H281DRAFT_03453 are separated by 181 nucleotides
H281DRAFT_03450: H281DRAFT_03450 - ABC-2 type transport system permease protein, at 532,008 to 533,150
_03450
H281DRAFT_03451: H281DRAFT_03451 - ABC-2 type transport system ATP-binding protein, at 533,147 to 534,097
_03451
H281DRAFT_03452: H281DRAFT_03452 - HlyD family secretion protein, at 534,094 to 535,062
_03452
H281DRAFT_03453: H281DRAFT_03453 - transcriptional regulator, TetR family, at 535,244 to 536,077
_03453
Position (kb) 534
535
536 Strain fitness (log2 ratio) -1
0
1 at 533.319 kb on - strand, within H281DRAFT_03451 at 533.467 kb on - strand, within H281DRAFT_03451 at 533.763 kb on + strand, within H281DRAFT_03451 at 534.173 kb on + strand at 534.173 kb on + strand at 534.173 kb on + strand at 534.174 kb on - strand at 534.203 kb on + strand, within H281DRAFT_03452 at 534.242 kb on + strand, within H281DRAFT_03452 at 534.242 kb on + strand, within H281DRAFT_03452 at 534.243 kb on - strand, within H281DRAFT_03452 at 534.293 kb on - strand, within H281DRAFT_03452 at 534.346 kb on + strand, within H281DRAFT_03452 at 534.955 kb on + strand, within H281DRAFT_03452 at 535.539 kb on + strand, within H281DRAFT_03453 at 535.578 kb on - strand, within H281DRAFT_03453 at 535.605 kb on - strand, within H281DRAFT_03453 at 535.993 kb on + strand, within H281DRAFT_03453
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 533,319 - H281DRAFT_03451 0.18 -0.5 533,467 - H281DRAFT_03451 0.34 -0.3 533,763 + H281DRAFT_03451 0.65 -0.5 534,173 + -0.3 534,173 + -0.2 534,173 + -0.2 534,174 - +0.8 534,203 + H281DRAFT_03452 0.11 +1.7 534,242 + H281DRAFT_03452 0.15 +0.8 534,242 + H281DRAFT_03452 0.15 -0.6 534,243 - H281DRAFT_03452 0.15 +0.1 534,293 - H281DRAFT_03452 0.21 +0.4 534,346 + H281DRAFT_03452 0.26 -0.5 534,955 + H281DRAFT_03452 0.89 +0.4 535,539 + H281DRAFT_03453 0.35 -0.3 535,578 - H281DRAFT_03453 0.40 +0.5 535,605 - H281DRAFT_03453 0.43 -0.2 535,993 + H281DRAFT_03453 0.90 +0.5
Or see this region's nucleotide sequence