Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03425 and H281DRAFT_03426 are separated by 349 nucleotides H281DRAFT_03426 and H281DRAFT_03427 are separated by 3 nucleotides
H281DRAFT_03425: H281DRAFT_03425 - transcriptional regulator, LacI family, at 499,798 to 500,865
_03425
H281DRAFT_03426: H281DRAFT_03426 - cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-), at 501,215 to 502,108
_03426
H281DRAFT_03427: H281DRAFT_03427 - cytochrome bo3 quinol oxidase subunit 1 apoprotein, at 502,112 to 504,127
_03427
Position (kb) 501
502
503 Strain fitness (log2 ratio) -1
0
1
2 at 500.880 kb on + strand at 501.084 kb on - strand at 501.145 kb on + strand at 501.146 kb on - strand at 501.180 kb on - strand at 501.214 kb on + strand at 501.214 kb on + strand at 501.215 kb on - strand at 501.449 kb on + strand, within H281DRAFT_03426 at 501.449 kb on + strand, within H281DRAFT_03426 at 501.449 kb on + strand, within H281DRAFT_03426 at 501.449 kb on + strand, within H281DRAFT_03426 at 501.824 kb on + strand, within H281DRAFT_03426 at 502.053 kb on - strand at 502.111 kb on + strand at 502.111 kb on + strand at 502.112 kb on - strand at 502.292 kb on + strand at 502.292 kb on + strand at 502.293 kb on - strand at 502.676 kb on + strand, within H281DRAFT_03427 at 502.676 kb on + strand, within H281DRAFT_03427 at 502.676 kb on + strand, within H281DRAFT_03427 at 502.677 kb on - strand, within H281DRAFT_03427 at 502.677 kb on - strand, within H281DRAFT_03427 at 502.677 kb on - strand, within H281DRAFT_03427 at 502.680 kb on + strand, within H281DRAFT_03427 at 502.681 kb on - strand, within H281DRAFT_03427 at 502.881 kb on - strand, within H281DRAFT_03427 at 502.970 kb on + strand, within H281DRAFT_03427 at 502.970 kb on + strand, within H281DRAFT_03427 at 503.000 kb on + strand, within H281DRAFT_03427 at 503.001 kb on - strand, within H281DRAFT_03427 at 503.061 kb on - strand, within H281DRAFT_03427
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 500,880 + +0.3 501,084 - -0.2 501,145 + -0.3 501,146 - +0.1 501,180 - +0.2 501,214 + -1.1 501,214 + +1.5 501,215 - +0.1 501,449 + H281DRAFT_03426 0.26 -0.1 501,449 + H281DRAFT_03426 0.26 +0.2 501,449 + H281DRAFT_03426 0.26 -1.0 501,449 + H281DRAFT_03426 0.26 +0.3 501,824 + H281DRAFT_03426 0.68 -0.0 502,053 - -0.6 502,111 + +1.0 502,111 + -0.5 502,112 - +0.5 502,292 + +0.1 502,292 + -0.2 502,293 - -0.2 502,676 + H281DRAFT_03427 0.28 +0.1 502,676 + H281DRAFT_03427 0.28 +0.1 502,676 + H281DRAFT_03427 0.28 +0.6 502,677 - H281DRAFT_03427 0.28 -0.4 502,677 - H281DRAFT_03427 0.28 +0.6 502,677 - H281DRAFT_03427 0.28 +0.1 502,680 + H281DRAFT_03427 0.28 -1.2 502,681 - H281DRAFT_03427 0.28 +0.4 502,881 - H281DRAFT_03427 0.38 +0.6 502,970 + H281DRAFT_03427 0.43 -0.1 502,970 + H281DRAFT_03427 0.43 +0.1 503,000 + H281DRAFT_03427 0.44 +2.4 503,001 - H281DRAFT_03427 0.44 +1.1 503,061 - H281DRAFT_03427 0.47 +0.1
Or see this region's nucleotide sequence