Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02942

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02941 and H281DRAFT_02942 are separated by 186 nucleotidesH281DRAFT_02942 and H281DRAFT_02943 are separated by 25 nucleotides H281DRAFT_02941: H281DRAFT_02941 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 553,399 to 554,562 _02941 H281DRAFT_02942: H281DRAFT_02942 - glycerate dehydrogenase, at 554,749 to 555,693 _02942 H281DRAFT_02943: H281DRAFT_02943 - DNA-binding transcriptional regulator, LysR family, at 555,719 to 556,633 _02943 Position (kb) 554 555 556Strain fitness (log2 ratio) -3 -2 -1 0 1at 554.206 kb on + strand, within H281DRAFT_02941at 554.207 kb on - strand, within H281DRAFT_02941at 554.321 kb on - strand, within H281DRAFT_02941at 554.540 kb on - strandat 555.452 kb on + strand, within H281DRAFT_02942at 555.464 kb on - strand, within H281DRAFT_02942at 555.496 kb on - strand, within H281DRAFT_02942at 556.294 kb on + strand, within H281DRAFT_02943at 556.333 kb on + strand, within H281DRAFT_02943at 556.512 kb on - strand, within H281DRAFT_02943at 556.512 kb on - strand, within H281DRAFT_02943at 556.615 kb on + strandat 556.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
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554,206 + H281DRAFT_02941 0.69 +0.2
554,207 - H281DRAFT_02941 0.69 +0.9
554,321 - H281DRAFT_02941 0.79 -2.8
554,540 - -0.3
555,452 + H281DRAFT_02942 0.74 -1.3
555,464 - H281DRAFT_02942 0.76 -3.0
555,496 - H281DRAFT_02942 0.79 -0.6
556,294 + H281DRAFT_02943 0.63 -0.0
556,333 + H281DRAFT_02943 0.67 +0.0
556,512 - H281DRAFT_02943 0.87 +0.4
556,512 - H281DRAFT_02943 0.87 -0.2
556,615 + +0.8
556,616 - -0.0

Or see this region's nucleotide sequence