Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02938 and H281DRAFT_02939 are separated by 313 nucleotides H281DRAFT_02939 and H281DRAFT_02940 are separated by 379 nucleotides H281DRAFT_02940 and H281DRAFT_02941 are separated by 33 nucleotides
H281DRAFT_02938: H281DRAFT_02938 - Fucose 4-O-acetylase, at 550,511 to 551,602
_02938
H281DRAFT_02939: H281DRAFT_02939 - hypothetical protein, at 551,916 to 552,053
_02939
H281DRAFT_02940: H281DRAFT_02940 - beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24), at 552,433 to 553,365
_02940
H281DRAFT_02941: H281DRAFT_02941 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 553,399 to 554,562
_02941
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 551.505 kb on - strand at 551.655 kb on - strand at 551.739 kb on + strand at 551.917 kb on + strand at 551.917 kb on + strand at 551.990 kb on + strand, within H281DRAFT_02939 at 551.991 kb on - strand, within H281DRAFT_02939 at 553.095 kb on + strand, within H281DRAFT_02940 at 553.317 kb on + strand at 553.317 kb on + strand at 553.318 kb on - strand at 553.372 kb on - strand at 553.534 kb on + strand, within H281DRAFT_02941 at 554.206 kb on + strand, within H281DRAFT_02941 at 554.207 kb on - strand, within H281DRAFT_02941 at 554.321 kb on - strand, within H281DRAFT_02941
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 551,505 - +0.9 551,655 - +0.5 551,739 + -1.5 551,917 + -0.2 551,917 + -0.4 551,990 + H281DRAFT_02939 0.54 +0.3 551,991 - H281DRAFT_02939 0.54 -3.6 553,095 + H281DRAFT_02940 0.71 -1.3 553,317 + +0.4 553,317 + -0.3 553,318 - -0.6 553,372 - -0.4 553,534 + H281DRAFT_02941 0.12 +1.6 554,206 + H281DRAFT_02941 0.69 +0.2 554,207 - H281DRAFT_02941 0.69 +0.9 554,321 - H281DRAFT_02941 0.79 -2.8
Or see this region's nucleotide sequence