Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02891 and H281DRAFT_02892 are separated by 216 nucleotides H281DRAFT_02892 and H281DRAFT_02893 are separated by 416 nucleotides
H281DRAFT_02891: H281DRAFT_02891 - transcriptional regulator, propionate catabolism operon regulatory protein, at 492,562 to 494,562
_02891
H281DRAFT_02892: H281DRAFT_02892 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 494,779 to 495,660
_02892
H281DRAFT_02893: H281DRAFT_02893 - drug resistance transporter, EmrB/QacA subfamily, at 496,077 to 497,516
_02893
Position (kb) 494
495
496 Strain fitness (log2 ratio) -1
0
1
2
3 at 494.016 kb on - strand, within H281DRAFT_02891 at 494.330 kb on + strand, within H281DRAFT_02891 at 494.330 kb on + strand, within H281DRAFT_02891 at 494.331 kb on - strand, within H281DRAFT_02891 at 494.331 kb on - strand, within H281DRAFT_02891 at 494.414 kb on + strand at 494.414 kb on + strand at 494.496 kb on + strand at 494.496 kb on + strand at 494.496 kb on + strand at 494.497 kb on - strand at 494.497 kb on - strand at 494.501 kb on - strand at 494.501 kb on - strand at 494.501 kb on - strand at 494.501 kb on - strand at 494.908 kb on + strand, within H281DRAFT_02892 at 494.908 kb on + strand, within H281DRAFT_02892 at 495.068 kb on + strand, within H281DRAFT_02892 at 495.069 kb on - strand, within H281DRAFT_02892 at 495.622 kb on + strand at 495.622 kb on + strand at 495.623 kb on - strand at 495.730 kb on + strand at 495.730 kb on + strand at 495.730 kb on + strand at 495.731 kb on - strand at 495.731 kb on - strand at 495.731 kb on - strand at 495.806 kb on + strand at 495.806 kb on + strand at 495.806 kb on + strand at 495.806 kb on + strand at 495.807 kb on - strand at 495.848 kb on - strand at 495.849 kb on + strand at 495.850 kb on - strand at 495.850 kb on - strand at 495.850 kb on - strand at 495.850 kb on - strand at 495.961 kb on - strand at 495.992 kb on + strand at 496.046 kb on + strand at 496.047 kb on - strand at 496.123 kb on - strand at 496.123 kb on - strand at 496.125 kb on - strand at 496.245 kb on + strand, within H281DRAFT_02893 at 496.246 kb on - strand, within H281DRAFT_02893 at 496.502 kb on - strand, within H281DRAFT_02893 at 496.563 kb on + strand, within H281DRAFT_02893 at 496.563 kb on + strand, within H281DRAFT_02893 at 496.563 kb on + strand, within H281DRAFT_02893 at 496.564 kb on - strand, within H281DRAFT_02893 at 496.564 kb on - strand, within H281DRAFT_02893 at 496.564 kb on - strand, within H281DRAFT_02893
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 494,016 - H281DRAFT_02891 0.73 -0.3 494,330 + H281DRAFT_02891 0.88 -0.2 494,330 + H281DRAFT_02891 0.88 -0.2 494,331 - H281DRAFT_02891 0.88 +0.9 494,331 - H281DRAFT_02891 0.88 +0.3 494,414 + -0.9 494,414 + +0.1 494,496 + +1.0 494,496 + +0.1 494,496 + +0.5 494,497 - -0.4 494,497 - -0.2 494,501 - +0.1 494,501 - -0.9 494,501 - +0.4 494,501 - +1.0 494,908 + H281DRAFT_02892 0.15 -0.5 494,908 + H281DRAFT_02892 0.15 +0.5 495,068 + H281DRAFT_02892 0.33 +0.4 495,069 - H281DRAFT_02892 0.33 -1.2 495,622 + +0.0 495,622 + -1.6 495,623 - +0.2 495,730 + -0.4 495,730 + -0.9 495,730 + -0.9 495,731 - +0.7 495,731 - +0.3 495,731 - -0.2 495,806 + -0.9 495,806 + +0.1 495,806 + -0.6 495,806 + -0.7 495,807 - -0.6 495,848 - -0.2 495,849 + +1.3 495,850 - -0.4 495,850 - -0.5 495,850 - +0.2 495,850 - -1.5 495,961 - +0.2 495,992 + -0.4 496,046 + -0.3 496,047 - +0.1 496,123 - +0.7 496,123 - +3.3 496,125 - -0.1 496,245 + H281DRAFT_02893 0.12 +0.2 496,246 - H281DRAFT_02893 0.12 +0.7 496,502 - H281DRAFT_02893 0.30 +0.3 496,563 + H281DRAFT_02893 0.34 +0.1 496,563 + H281DRAFT_02893 0.34 -0.6 496,563 + H281DRAFT_02893 0.34 -0.5 496,564 - H281DRAFT_02893 0.34 +0.3 496,564 - H281DRAFT_02893 0.34 +0.5 496,564 - H281DRAFT_02893 0.34 -0.0
Or see this region's nucleotide sequence