Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02329 and H281DRAFT_02330 are separated by 50 nucleotides H281DRAFT_02330 and H281DRAFT_02331 are separated by 119 nucleotides
H281DRAFT_02329: H281DRAFT_02329 - dihydroxyacid dehydratase, at 484,553 to 486,286
_02329
H281DRAFT_02330: H281DRAFT_02330 - L-arabinose ABC transporter membrane protein, at 486,337 to 487,341
_02330
H281DRAFT_02331: H281DRAFT_02331 - L-arabinose ABC transporter ATP-binding protein, at 487,461 to 489,023
_02331
Position (kb) 486
487
488 Strain fitness (log2 ratio) -2
-1
0
1
2 at 485.801 kb on - strand, within H281DRAFT_02329 at 486.082 kb on - strand, within H281DRAFT_02329 at 486.133 kb on + strand at 486.133 kb on + strand at 486.133 kb on + strand at 486.133 kb on + strand at 486.133 kb on + strand at 486.133 kb on + strand at 486.134 kb on - strand at 486.134 kb on - strand at 486.134 kb on - strand at 486.134 kb on - strand at 486.134 kb on - strand at 486.134 kb on - strand at 486.310 kb on + strand at 486.310 kb on + strand at 486.310 kb on + strand at 486.310 kb on + strand at 486.310 kb on + strand at 486.311 kb on - strand at 486.311 kb on - strand at 486.311 kb on - strand at 486.311 kb on - strand at 486.311 kb on - strand at 486.338 kb on + strand at 486.410 kb on + strand at 486.410 kb on + strand at 486.410 kb on + strand at 486.411 kb on - strand at 486.797 kb on + strand, within H281DRAFT_02330 at 486.941 kb on + strand, within H281DRAFT_02330 at 486.942 kb on - strand, within H281DRAFT_02330 at 487.015 kb on + strand, within H281DRAFT_02330 at 487.015 kb on + strand, within H281DRAFT_02330 at 487.015 kb on + strand, within H281DRAFT_02330 at 487.021 kb on - strand, within H281DRAFT_02330 at 487.231 kb on + strand, within H281DRAFT_02330 at 487.232 kb on - strand, within H281DRAFT_02330 at 487.232 kb on - strand, within H281DRAFT_02330 at 487.232 kb on - strand, within H281DRAFT_02330 at 487.232 kb on - strand, within H281DRAFT_02330 at 487.462 kb on + strand at 487.462 kb on + strand at 487.463 kb on - strand at 487.608 kb on - strand at 487.608 kb on - strand at 487.630 kb on + strand, within H281DRAFT_02331 at 488.047 kb on + strand, within H281DRAFT_02331 at 488.047 kb on + strand, within H281DRAFT_02331 at 488.048 kb on - strand, within H281DRAFT_02331 at 488.209 kb on + strand, within H281DRAFT_02331 at 488.209 kb on + strand, within H281DRAFT_02331 at 488.336 kb on - strand, within H281DRAFT_02331
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 485,801 - H281DRAFT_02329 0.72 -0.0 486,082 - H281DRAFT_02329 0.88 +2.1 486,133 + -0.5 486,133 + -0.5 486,133 + +1.2 486,133 + -0.1 486,133 + -0.3 486,133 + -0.3 486,134 - -0.3 486,134 - -1.2 486,134 - +1.0 486,134 - +0.3 486,134 - -0.6 486,134 - -0.5 486,310 + -0.5 486,310 + +0.5 486,310 + -0.0 486,310 + -1.1 486,310 + +1.3 486,311 - +0.6 486,311 - -1.2 486,311 - +0.1 486,311 - +0.3 486,311 - +0.3 486,338 + -1.5 486,410 + -0.6 486,410 + -1.3 486,410 + -0.4 486,411 - -0.6 486,797 + H281DRAFT_02330 0.46 -0.0 486,941 + H281DRAFT_02330 0.60 -0.1 486,942 - H281DRAFT_02330 0.60 -0.1 487,015 + H281DRAFT_02330 0.67 -2.1 487,015 + H281DRAFT_02330 0.67 +0.6 487,015 + H281DRAFT_02330 0.67 +0.7 487,021 - H281DRAFT_02330 0.68 -0.9 487,231 + H281DRAFT_02330 0.89 +0.2 487,232 - H281DRAFT_02330 0.89 +0.1 487,232 - H281DRAFT_02330 0.89 +1.0 487,232 - H281DRAFT_02330 0.89 +0.4 487,232 - H281DRAFT_02330 0.89 -0.2 487,462 + +0.0 487,462 + +0.5 487,463 - +2.0 487,608 - +0.7 487,608 - +0.1 487,630 + H281DRAFT_02331 0.11 -0.0 488,047 + H281DRAFT_02331 0.37 +0.6 488,047 + H281DRAFT_02331 0.37 -0.9 488,048 - H281DRAFT_02331 0.38 +0.3 488,209 + H281DRAFT_02331 0.48 -0.2 488,209 + H281DRAFT_02331 0.48 -0.6 488,336 - H281DRAFT_02331 0.56 -0.4
Or see this region's nucleotide sequence